2021
Articles référencés dans le Web of Science
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Bagayoko I., Celli M. G., Romay G., Poulicard Nils, Galzi Agnès, Julian C., Filloux D., Roumagnac P., Sereme D., Bragard C., Hébrard Eugénie. (2021). Genetic diversity of rice stripe necrosis virus and new insights into evolution of the genus Benyvirus. Viruses, 13 (5), p. 737 [12 p.].
Identifiant IRD :
fdi:010081531
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Barro M., Kassankogno A. I., Wonni I., Sereme D., Somda I., Kabore H. K., Béna Gilles, Brugidou Christophe, Tharreau D., Tollenaere Charlotte. (2021). Spatiotemporal survey of multiple rice diseases in irrigated areas compared to rainfed lowlands in the Western Burkina Faso. Plant Disease, 105 (12), p. 3907-3917. ISSN 0191-2917.
Identifiant IRD :
fdi:010084273
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Béna Gilles, Fory P. A., Rico J. E., Mosquera G. M. (2021). VNTR typing of the bacterial rice pathogen Burkholderia glumae reveals the coexistence of several diverging lineages in a single field in Colombia. Plant Disease, 105 (11), p. 3466-3473. ISSN 0191-2917.
Identifiant IRD :
fdi:010085713
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Busset Nicolas, Gully Djamel, Teulet Albin, Fardoux Joël, Camuel A., Cornu D., Severac D., Giraud Eric, Mergaert P. (2021). The Type III effectome of the symbiotic Bradyrhizobium vignae strain ors3257. Biomolecules, 11 (11), p. 1592 [19 p.].
Identifiant IRD :
fdi:010083783
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Campos P. E., Crego C. G., Boyer K., Gaudeul M., Baider C., Richard D., Pruvost O., Roumagnac P., Szurek Boris, Becker N., Gagnevin L., Rieux A. (2021). First historical genome of a crop bacterial pathogen from herbarium specimen : insights into citrus canker emergence. PLoS Pathogens, 17 (7), e1009714 [25 p.]. ISSN 1553-7366.
Identifiant IRD :
fdi:010082708
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Catara V., Cubero J., Pothier J. F., Bosis E., Bragard C., Dermic E., Holeva M. C., Jacques M. A., Petter F., Pruvost O., Robene I., Studholme D. J., Tavares F., Vicente J. G., Koebnik Ralf, Costa J. (2021). Trends in molecular diagnosis and diversity studies for phytosanitary regulated Xanthomonas. Microorganisms, 9 (4), p. 862 [30 p.].
Identifiant IRD :
fdi:010081373
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Chevenet François, Fargette Denis, Guindon S., Banuls Anne-Laure. (2021). EvoLaps : a web interface to visualize continuous phylogeographic reconstructions. BMC Bioinformatics, 22 (1), p. 463 [12 p.]. ISSN 1471-2105.
Identifiant IRD :
fdi:010083165
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Costa J., Pothier J. F., Boch J., Stefani E., Jacques M. A., Catara V., Koebnik Ralf. (2021). Integrating science on Xanthomonadaceae for sustainable plant disease management in Europe. Molecular Plant Pathology, 22 (12), p. 1461-1463. ISSN 1464-6722.
Identifiant IRD :
fdi:010083347
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Dassou A. G., Idohou R., Azandeme-Hounmalon G. Y., Sabi-Sabi A., Houndete J., Silvie Pierre, Dansi A. (2021). Fall armyworm, Spodoptera frugiperda (JE Smith) in maize cropping systems in Benin : abundance, damage, predatory ants and potential control. International Journal of Tropical Insect Science, 41 (4), 2627-2636. ISSN 1742-7584.
Identifiant IRD :
fdi:010080966
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Djerrab D., Bertrand B., Breitler J. C., Leran S., Dechamp E., Campa Claudine, Barrachina C., Conejero G., Etienne H., Sulpice R. (2021). Photoperiod-dependent transcriptional modifications in key metabolic pathways in Coffea arabica. Tree Physiology, 41 (2), p. 302-316. ISSN 0829-318X.
Identifiant IRD :
fdi:010081530
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Duy P. N., Lan D. T., Thu H. P., Thu H. P. T., Thanh H. N., Pham N. P., Auguy Florence, Thu H. B. T., Manh T. B., Cunnac Sébastien, Pham X. H. (2021). Improved bacterial leaf blight disease resistance in the major elite Vietnamese rice cultivar TBR225 via editing of the OsSWEET14 promoter. PLoS One, 16 (9), p. e0255470 [16 p.]. ISSN 1932-6203.
Identifiant IRD :
fdi:010083878
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Garcia-Ruiz H., Szurek Boris, Van den Ackerveken G. (2021). Stop helping pathogens : engineering plant susceptibility genes for durable resistance. Current Opinion in Biotechnology, 70, p. 187-195. ISSN 0958-1669.
Identifiant IRD :
fdi:010082610
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Gondiho Mendes R.A., Basso M.F., Melo B.P. de, Pires Ribeiro T., Lima R.N., Araujo J. F. de, Grossi-de-Sa M., Silva Mattos V. da, Coiti Togawa R., Saliba Albuquerque E.V., Lisei de Sa M.E., Mattar da Silva M.C., Macedo L.L.P., Rocha Fragoso D. da, Fernandez Diana, Vignols F., Grossi-de-Sa M.F. (2021). The Mi-EFF1/Minc17998 effector interacts with the soybean GmHub6 protein to promote host plant parasitism by Meloidogyne incognita. Physiological and Molecular Plant Pathology, 114, 101630 [11 p.]. ISSN 0885-5765.
Identifiant IRD :
fdi:010081995
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Hily J. M., Komar V., Poulicard Nils, Velt A., Renault L., Mustin P., Vigne E., Spilmont A. S., Lemaire O. (2021). Evidence of differential spreading events of grapevine pinot Gris virus in Italy using datamining as a tool. European Journal of Plant Pathology, 161 (3), 735-742. ISSN 0929-1873.
Identifiant IRD :
fdi:010082739
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Hily J. M., Komar V., Poulicard Nils, Vigne E., Jacquet O., Protet N., Spilmont A. S., Lemaire O. (2021). Biological evidence and molecular modeling of a grapevine Pinot gris virus outbreak in a vineyard. Phytobiomes Journal, 5 (4), p. 464-472.
Identifiant IRD :
fdi:010083935
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Hily J. M., Poulicard Nils, Kubina J., Reynard J. S., Spilmont A. S., Fuchs M., Lemaire O., Vigne E. (2021). Metagenomic analysis of nepoviruses : diversity, evolution and identification of a genome region in members of subgroup A that appears to be important for host range. Archives of Virology, 166 (10), 2789-2801. ISSN 0304-8608.
Identifiant IRD :
fdi:010082626
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Issaka S., Traore O., Longue R. D. S., Galzi Agnès, Gill M. S., Dellicour S., Bastide P., Guindon S., Hébrard Eugénie, Dugue M. J., Sere Y., Semballa S., Ake S., Lemey P., Fargette Denis. (2021). Rivers and landscape ecology of a plant virus, Rice yellow mottle virus along the Niger Valley. Virus Evolution, 7 (2), veab072 [14 p.].
Identifiant IRD :
fdi:010084300
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Kini K., Agnimonhan R., Dossa R., Silue D., Koebnik Ralf. (2021). Genomics-informed multiplex PCR scheme for rapid identification of rice-associated bacteria of the genus Pantoea. Plant Disease, 105 (9), p. 2389-2394. ISSN 0191-2917.
Identifiant IRD :
fdi:010083832
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Kini K., Wonni I., Silue D., Koebnik Ralf. (2021). Development of two loop-mediated isothermal amplification (LAMP) genomics-informed diagnostic protocols for rapid detection of Pantoea species on rice. MethodsX, 8, 101216 [8 p.].
Identifiant IRD :
fdi:010083237
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Koebnik Ralf, Burokiene D., Bragard C., Chang C., Fischer-Le Saux M., Kolliker R., Lang J. M., Leach J. E., Luna E. K., Portier P., Sagia A., Ziegle J., Cohen S. P., Jacobs J. M. (2021). The complete genome sequence of Xanthomonas theicola, the causal agent of canker on tea plants, reveals novel secretion systems in clade-1 Xanthomonads. Phytopathology, 111 (4), p. 611-616. ISSN 0031-949X.
Identifiant IRD :
fdi:010081451
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Lacombe Séverine, Bangratz Martine, Ta H. A., Nguyen T. D., Gantet Pascal, Brugidou Christophe. (2021). Optimized RNA-silencing strategies for rice ragged stunt virus resistance in rice. Plants, 10 (10), 2008 [17 p.].
Identifiant IRD :
fdi:010083327
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Mahrach L., Gutierrez A., Huchard M., Keip P., Marnotte P., Silvie Pierre, Martin P. (2021). Combining implications and conceptual analysis to learn from a pesticidal plant knowledge base. In :
Braun T. (ed.), Gehrke M. (ed.), Hanika T. (ed.), Hernandez N. (ed.). Graph-based representation and reasoning. Cham : Springer, 57-72. (Lecture Notes in Computer Science ; 12879). ICCS.International Conference on Conceptual Structures, 26., En ligne, 2021/09/20-22. ISBN 978-3-030-86981-6.
Identifiant IRD :
fdi:010084434
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Mendes R. A. G., Basso M. F., de Araujo J. F., de Melo B. P., Lima R. N., Ribeiro T. P., Mattos V. D., Albuquerque E. V. S., Grossi-de-Sa M., Tameirao S. N. D., Fragoso R. D., da Silva M. C. M., Vignols F., Fernandez Diana, Grossi-de-Sa M. F. (2021). Minc00344 and Mj-NULG1a effectors interact with GmHub10 protein to promote the soybean parasitism by Meloidogyne incognita and M. javanica. Experimental Parasitology, 229, p. 108153 [12 p.]. ISSN 0014-4894.
Identifiant IRD :
fdi:010082831
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Mondedji A. D., Silvie Pierre, Nyamador W. S., Martin P., Agboyi L. K., Amevoin K., Ketoh G. K., Glitho I. A. (2021). Cabbage production in West Africa and IPM with a focus on plant-based extracts and a complementary worldwide vision. Plants, 10 (3), p. 529 [36 p.].
Identifiant IRD :
fdi:010081170
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Nguye P. V., Tran T. B., Nguyen P. T., Nguyen L. N. T., Bien T. L. T., Ton L. B., Le T. T. H., Ton A. T., Nguyen Q. C. B., Huynh B. V., Le D. D., Bellafiore Stéphane. (2021). The response of rice varieties to Meloidogyne graminicola from the Mekong Delta, Vietnam. Nematology, 23 (10), p. 1153-1170. ISSN 1388-5545.
Identifiant IRD :
fdi:010083402
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Phan N. T., Besnard G., Ouazahrou R., Sanchez W. S., Gil L., Manzi S., Bellafiore Stéphane. (2021). Genome sequence of the coffee root-knot nematode Meloidogyne exigua. Journal of Nematology, 53, p. 1-6. ISSN 0022-300X.
Identifiant IRD :
fdi:010082323
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Pouteau Robin, Biurrun I., Brunel Caroline, Chytry M., Dawson W., Essl F., Fristoe T., Haveman R., Hobohm C., Jansen F., Kreft H., Lenoir J., Lenzner B., Meyer C., Moeslund J. E., Pergl J., Pysek P., Svenning J. C., Thuiller W., Weigelt P., Wohlgemuth T., Yang Q., van Kleunen M. (2021). Potential alien ranges of European plants will shrink in the future, but less so for already naturalized than for not yet naturalized species. Diversity and Distributions, 27 (11), 2063-2076. ISSN 1366-9516.
Identifiant IRD :
fdi:010082592
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Reshetnyak G., Jacobs J. M., Auguy Florence, Sciallano C., Claude L., Medina C., Perez-Quintero A. L., Comte Aurore, Thomas E., Bogdanove A., Koebnik Ralf, Szurek Boris, Dievart A., Brugidou Christophe, Lacombe Séverine, Cunnac Sébastien. (2021). An atypical class of non-coding small RNAs is produced in rice leaves upon bacterial infection. Scientific Reports - Nature, 11 (1), 24141 [20 p.]. ISSN 2045-2322.
Identifiant IRD :
fdi:010083857
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Riah N., Lajudie Philippe de, Béna Gilles, Heulin K., Djekoun A. (2021). Variability in symbiotic efficiency with respect to the growth of pea and lentil inoculated with various rhizobial genotypes originating from sub-humid and semi-arid regions of eastern Algeria. Symbiosis, [Early access], p. [14 p.]. ISSN 0334-5114.
Identifiant IRD :
fdi:010083364
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Silvie Pierre, Martin P., Huchard M., Keip P., Gutierrez A., Sarter S. (2021). Prototyping a knowledge-based system to identify botanical extracts for plant health in Sub-Saharan Africa. Plants, 10 (5), 896 [24 p.]. ISSN 2223-7747.
Identifiant IRD :
fdi:010080326
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Somera M., Fargette Denis, Hébrard Eugénie, Sarmiento C., ICTV Report Consortium. (2021). ICTV virus taxonomy profile : Solemoviridae 2021. Journal of General Virology, 102 (12), 001707 [2 p.]. ISSN 0022-1317.
Identifiant IRD :
fdi:010084216
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Vancheva T., Bogatzevska N., Moncheva P., Mitrev S., Verniere C., Koebnik Ralf. (2021). Molecular epidemiology of Xanthomonas euvesicatoria strains from the Balkan peninsula revealed by a new multiple-locus variable-number tandem-repeat analysis scheme. Microorganisms, 9 (3), p. 536 [19 p.].
Identifiant IRD :
fdi:010081164
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Vannini C., Domingo G., Fiorilli V., Seco D. G., Novero M., Marsoni M., Wisniewski-Dye F., Bracale M., Moulin Lionel, Bonfante P. (2021). Proteomic analysis reveals how pairing of a Mycorrhizal fungus with plant growth-promoting bacteria modulates growth and defense in wheat. Plant Cell and Environment, 44 (6), 1946-1960. ISSN 0140-7791.
Identifiant IRD :
fdi:010081096
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Vermeire M. L., Thoresen J., Lennard K., Vikram S., Kirkman K., Swemmer A. M., Te Beest M., Siebert F., Gordijn P., Venter Z., Brunel Caroline, Wolfaard G., Krumins J. A., Cramer M. D., Hawkins H. J. (2021). Fire and herbivory drive fungal and bacterial communities through distinct above-and-belowground mechanisms. Science of the Total Environment, 785, p. 147189 [11 p.]. ISSN 0048-9697.
Identifiant IRD :
fdi:010082209
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Vermeire Marie-Liesse, Bottinelli Nicolas, Villenave C., Jouquet Pascal, Hue Nguye Thie, Maeght Jean-Luc, Aribi Jamel , Aroui Boukbida Hanane, Minh Tien Tran, Masson A.S., Chapuis Elodie, Bellafiore Stéphane. (2021). Comparison of nematode communities in anecic earthworm casts and adjacent soil reveal a land use-independent trophic group signature. Global Ecology and Conservation, 27, e01565 [7 p.]. ISSN 2351-9894.
Identifiant IRD :
fdi:010081240
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Wallner A., Moulin Lionel, Busset Nicolas, Rimbault Isabelle, Béna Gilles. (2021). Genetic diversity of type 3 secretion system in Burkholderia s.l. and links with plant host adaptation. Frontiers in Microbiology, 12, 761215 [13 p.].
Identifiant IRD :
fdi:010083334
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Yainna S., Negre N., Silvie Pierre, Brevault T., Tay W. T., Gordon K., dAlencon E., Walsh T., Nam K. (2021). Geographic monitoring of insecticide resistance mutations in native and invasive populations of the fall armyworm. Insects, 12 (5), p. 468 [12 p.].
Identifiant IRD :
fdi:010081513
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Zarate-Chaves C. A., de la Cruz D. G., Verdier Valérie, Lopez C. E., Bernal A., Szurek Boris. (2021). Cassava diseases caused by Xanthomonas phaseoli pv. manihotis and Xanthomonas cassavae. Molecular Plant Pathology, 22 (12), 1520-1537. ISSN 1464-6722.
Identifiant IRD :
fdi:010082248
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Zarate-Chaves C. A., Osorio-Rodriguez D., Mora R. E., Perez-Quintero A. L., Dereeper Alexis, Restrepo S., Lopez C. E., Szurek Boris, Bernal A. (2021). TAL effector repertoires of strains of Xanthomonas phaseoli pv. manihotis in commercial Cassava crops reveal high diversity at the country scale. Microorganisms, 9 (2), 315 [26 p.].
Identifiant IRD :
fdi:010081064
Articles
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Barro M., Konate K.A., Wonni I., Kassankogno A.I., Sabot François, Albar Laurence, Somda I., Béna Gilles, Ghesquière Alain, Kam H., Sié M., Cubry Philippe, Tollenaere Charlotte. (2021). Assessment of genetic diversity of rice in registered cultivars and farmers' fields in Burkina Faso. Crops, 1 (3), 129-141. ISSN 2673-7655.
Identifiant IRD :
fdi:010083579
Chapitres ou parties d'ouvrages
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Silvie Pierre, Martin P., Keip P., Huchard M., Marnotte P., Ilboudo Z., Tagne A., Sarter S. (2021). Le management des connaissances liées aux usages des plantes : une initiative combinant savoirs traditionnels et publications scientifiques pour l'approche One Health. In :
Profizi Jean Pierre (ed.), Ardila-Chauvet Stéphanie (ed.), Billot C. (ed.), Couteron Pierre (ed.), Delmas M. (ed.), Diep T.M.H. (ed.), Grandcolas P. (ed.), Kokou K. (ed.), Muller S. (ed.), Rana Anshuman (ed.), Ranarijaona H. L. T. (ed.), Sonke B. (ed.). Biodiversité des écosystèmes intertropicaux : connaissance, gestion durable et valorisation. Marseille : IRD, 683-699. (Synthèses). ISBN 978-2-7099-2938-7.
Identifiant IRD :
fdi:010084807
Colloques, congrès, séminaires
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Saoud J., Gutierrez A., Huchard M., Silvie Pierre, Martin P. (2021). Identifying explicit and tacit knowledge in a life science knowledge base [poster].
Antony : SFBI, 1 p. multigr. JOBIM.Journées Ouvertes de Biologie, Informatique et Mathématique, 21., Paris [En ligne] (FRA), 2021/07/6-9.
Identifiant IRD :
fdi:010084430
2020
Articles référencés dans le Web of Science
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Bangratz Martine, Wonni I., Kini K., Sondo M., Brugidou Christophe, Béna Gilles, Gnacko Fatoumata, Barro M., Koebnik Ralf, Silue D., Tollenaere Charlotte. (2020). Design of a new multiplex PCR assay for rice pathogenic bacteria detection and its application to infer disease incidence and detect co-infection in rice fields in Burkina Faso. PLoS One, 15 (4), e0232115 [13 p.]. ISSN 1932-6203.
Identifiant IRD :
fdi:010078129
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Brunel Caroline, Pouteau Robin, Dawson W., Pester M., Ramirez K. S., van Kleunen M. (2020). Towards unraveling macroecological patterns in rhizosphere microbiomes. Trends in Plant Science, 25 (10), p. 1017-1029. ISSN 1360-1385.
Identifiant IRD :
fdi:010079777
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Caradonia F., Ronga D., Fiore A., Barbieri R., Moulin Lionel, Terzi V., Francia E. (2020). Biostimulants and cherry rootstock increased tomato fruit yield and quality in sustainable farming systems. Italian Journal of Agronomy, 15 (2), p. 121-131. ISSN 1125-4718.
Identifiant IRD :
fdi:010079136
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Chapuis Elodie, Ali N., Nous C., Besnard G. (2020). Adaptive response to olive cultivation in a generalist parasitic nematode (Meloidogyne javanica) [+ Corrigendum, 2021, 132, 232]. Biological Journal of the Linnean Society, 131 (2), 356-368 [+ Corrigendum, 2021, 132, 232]. ISSN 0024-4066.
Identifiant IRD :
fdi:010079881
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Charr J. C., Garavito A., Guyeux C., Crouzillat D., Descombes P., Fournier C., Ly S. N., Raharimalala E. N., Rakotomalala J. J., Stoffelen P., Janssens S., Hamon Perla, Guyot Romain. (2020). Complex evolutionary history of coffees revealed by full plastid genomes and 28,800 nuclear SNP analyses, with particular emphasis on Coffea canephora (Robusta coffee). Molecular Phylogenetics and Evolution, 151, p. 106906 [13 p.]. ISSN 1055-7903.
Identifiant IRD :
fdi:010079508
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Cohen P., Butchacas J., Roman-Reyna V., Long J., Pesce C., Vancheva T., Bini F., Otto I., Szurek Boris, Leach J. E., Kumlehn J., Bragard C. G., Koebnik Ralf, Jacobs J. M. (2020). Tattle-TALEs : tools for testing type three targeting. Phytopathology, 110 (12), p. 196-196. American Phytopathological Society Annual Meeting Aug 10-14, 2020 ISSN 0031-949X.
Identifiant IRD :
fdi:010083250
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Cohen S. P., Luna E. K., Lang J. M., Ziegle J., Chang C., Leach J. E., Le-Saux M. F., Portier P., Koebnik Ralf, Jacobs J. M. (2020). High-quality genome resource of Xanthomonas hyacinthi generated via long-read sequencing. Plant Disease, 104 (4), p. 1011-1012. ISSN 0191-2917.
Identifiant IRD :
fdi:010079720
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De la Fuente Canto Carla, Simonin Marie, King E., Moulin Lionel, Bennett M. J., Castrillo G., Laplaze Laurent. (2020). An extended root phenotype : the rhizosphere, its formation and impacts on plant fitness. Plant Journal, 103 (3), 951-964. ISSN 0960-7412.
Identifiant IRD :
fdi:010078066
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Di Mattia J., Ryckebusch F., Vernerey M. S., Pirolles E., Sauvion N., Peterschmitt M., Zeddam Jean-Louis, Blanc S. (2020). Co-acquired nanovirus and geminivirus exhibit a contrasted localization within their common aphid vector. Viruses, 12 (3), p. art. 299 [14 p.].
Identifiant IRD :
fdi:010079007
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Di Mattia J., Vernerey M. S., Yvon M., Pirolles E., Villegas M., Gaafar Y., Ziebell H., Michalakis Y., Zeddam Jean-Louis, Blanc S. (2020). Route of a multipartite nanovirus across the body of its aphid vector. Journal of Virology, 94 (9), p. e01998-19 [15 p.]. ISSN 0022-538X.
Identifiant IRD :
fdi:010079024
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Duangsodsri T., Villain L., Vestalys I. R., Michalet S., Abdallah Cécile, Breitler J. C., Bordeaux M., Villegas A. M., Raherimandimby M., Legendre L., Etienne H., Bertrand B., Campa Claudine. (2020). 5-CQA and mangiferin, two leaf biomarkers of adaptation to full sun or shade conditions in Coffea arabica L.. Metabolites, 10 (10), p. 383 [22 p.].
Identifiant IRD :
fdi:010079946
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Dubrow Z., Audran C., Noel L., Szurek Boris, Lange H. W., Smart C. D., Blanquet G., Fuentes I., Bogdanove A. J., Carpenter S. (2020). Black Rot of crucifers in New York State and the role of transcription activator-like effectors. Phytopathology, 110 (12), p. 94-94. American Phytopathological Society Annual Meeting ISSN 0031-949X.
Identifiant IRD :
fdi:010083249
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El Adouzi M., Arriaga-Jimenez A., Dormont L., Barthes N., Labalette A., Lapeyre B., Bonato Olivier, Roy L. (2020). Modulation of feed composition is able to make hens less attractive to the poultry red mite Dermanyssus gallinae. Parasitology, 147 (2), p. 171-181. ISSN 0031-1820.
Identifiant IRD :
fdi:010077998
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Gluck-Thaler E., Cerutti A., Perez-Quintero A. L., Butchacas J., Roman-Reyna V., Madhavan V. N., Shantharaj D., Merfa M. V., Pesce C., Jauneau A., Vancheva T., Lang J. M., Allen C., Verdier Valérie, Gagnevin L., Szurek Boris, Beckham G. T., De La Fuente L., Patel H. K., Sonti R. V., Bragard C., Leach J. E., Noel L. D., Slot J. C., Koebnik Ralf, Jacobs J. M. (2020). Repeated gain and loss of a single gene modulates the evolution of vascular plant pathogen lifestyles. Science Advances, 6 (46), p. eabc4516 [10 p.]. ISSN 2375-2548.
Identifiant IRD :
fdi:010080024
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Guyot Romain, Hamon Perla, Couturon Emmanuel, Raharimalala N., Rakotomalala J. J., Lakkanna S., Sabatier S., Affouard A., Bonnet P. (2020). WCSdb : a database of wild Coffea species [Data paper]. Database, baaa069 [6 p.]. ISSN 1758-0463.
Identifiant IRD :
fdi:010080466
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Hily J. M., Poulicard Nils, Candresse T., Vigne E., Beuve M., Renault L., Velt A., Spilmont A. S., Lemaire O. (2020). Datamining, genetic diversity analyses, and phylogeographic reconstructions redefine the worldwide evolutionary history of grapevine Pinot gris virus and grapevine berry inner necrosis virus. Phytobiomes Journal, 4 (2), p. 165-177.
Identifiant IRD :
fdi:010078111
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Hufnagel B., Marques A., Soriano A., Marques L., Divol F., Doumas P., Sallet E., Mancinotti D., Carrere S., Marande W., Arribat S., Keller J., Huneau C., Blein T., Aime D., Laguerre M., Taylor J., Schubert V., Nelson M., Geu-Flores F., Crespi M., Gallardo K., Delaux P. M., Salse J., Berges H., Guyot Romain, Gouzy J., Peret B. (2020). High-quality genome sequence of white lupin provides insight into soil exploration and seed quality. Nature Communications, 11 (1), p. art. 492 [12 p.]. ISSN 2041-1723.
Identifiant IRD :
fdi:010079158
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Kante M., Flores C., Moufid Y., Wonni I., Hutin Mathilde, Thomas E., Fabre S., Gagnevin L., Dagno K., Verdier Valérie, Koita O., Szurek Boris. (2020). First report of Xanthomonas phaseoli pv. manihotis, the causal agent of cassava bacterial blight, in Mali. Plant Disease, 104 (6), p. 1852-1853. ISSN 0191-2917.
Identifiant IRD :
fdi:010078114
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Kini K., Lefeuvre P., Poulin L., Silue D., Koebnik Ralf. (2020). Genome resources of three West African strains of Pantoea ananatis causing bacterial blight and grain discoloration of rice. Phytopathology, 110 (9), p. 1500-1502. ISSN 0031-949X.
Identifiant IRD :
fdi:010079687
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Klonowska Agnieszka, Moulin Lionel, Ardley J. K., Braun F., Gollagher M. M., Zandberg J. D., Marinova D. V., Huntemann M., Reddy T. B. K., Varghese N. J., Woyke T., Ivanova N., Seshadri R., Kyrpides N., Reeve W. G. (2020). Novel heavy metal resistance gene clusters are present in the genome of Cupriavidus neocaledonicus STM 6070, a new species of Mimosa pudica microsymbiont isolated from heavy-metal-rich mining site soil. BMC Genomics, 21 (1), p. 214 [18 p.]. ISSN 1471-2164.
Identifiant IRD :
fdi:010080933
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Konan J. A., Guyot Romain, Koffi K. K., Vroh-Bi I., Zoro A. I. B. (2020). Molecular confirmation of varietal status in bottle gourd (Lagenaria siceraria) using genotyping-by-sequencing. Genome, 63 (11), p. 535-545. ISSN 0831-2796.
Identifiant IRD :
fdi:010079962
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Lemos S. M. C., Foncatti L. F. C., Guyot Romain, Paschoal A. R., Domingues D. S. (2020). Genome-wide screening and characterization of non-coding RNAs in Coffea canephora. Non-Coding RNA, 6 (3), p. 39 [15p.].
Identifiant IRD :
fdi:010079866
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Liu J., Fernandez Diana, Gao Y. J., Silvie Pierre, Gao Y. D., Dai G. H. (2020). Enzymology, histological and ultrastructural effects of ar-turmerone on Culex pipiens pallens larvae. Insects, 11 (6), p. art. 336 [13 p.].
Identifiant IRD :
fdi:010079366
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Lorenzo M. E., Bao L., Mendez L., Grille G., Bonato Olivier, Basso C. (2020). Preference of Orius insidiosus and Orius tristicolor (Hemiptera : Anthocoridae) for host plants in olfactometry and free-choice experiments. Florida Entomologist, 103 (4), p. 492-498. ISSN 0015-4040.
Identifiant IRD :
fdi:010080893
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Ly S. N., Garavito A., De Block P., Asselman P., Guyeux C., Charr J. C., Janssens S., Mouly A., Hamon Perla, Guyot Romain. (2020). Chloroplast genomes of Rubiaceae : comparative genomics and molecular phylogeny in subfamily Ixoroideae. PLoS One, 15 (4), p. art. e0232295 [21 p.]. ISSN 1932-6203.
Identifiant IRD :
fdi:010078132
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Marie L., Abdallah Cécile, Campa Claudine, Courtel P., Bordeaux M., Navarini L., Lonzarich V., Bosselmann A. S., Turreira-Garcia N., Alpizar E., Georget F., Breitler J. C., Etienne H., Bertrand B. (2020). G x E interactions on yield and quality in Coffea arabica : new F1 hybrids outperform American cultivars. Euphytica, 216 (5), p. art. 78 [17 p.]. ISSN 0014-2336.
Identifiant IRD :
fdi:010079000
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Martin P., Silvie Pierre, Marnotte P., Goebel F. R. (2020). A decision support system for determining sugarcane pest reservoir. Sugar Tech, 22 (4), 655-661. ISSN 0972-1525.
Identifiant IRD :
fdi:010079055
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Masson A. S., Bich H. H., Simonin Marie, Thi H. N., Czernic P., Moulin Lionel, Bellafiore Stéphane. (2020). Deep modifications of the microbiome of rice roots infected by the parasitic nematode Meloidogyne graminicola in highly infested fields in Vietnam. FEMS Microbiology Ecology, 96 (7), p. fiaa099 [14 p.]. ISSN 0168-6496.
Identifiant IRD :
fdi:010079587
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Mota A. P. Z., Fernandez Diana, Arraes F. B. M., Petitot Anne-Sophie, de Melo B. P., de Sa M. E. L., Grynberg P., Saraiva M. A. P., Guimaraes P. M., Brasileiro A. C. M., Albuquerque E. V. S., Danchin E. G. J., Grossi-de-Sa M. F. (2020). Evolutionarily conserved plant genes responsive to root-knot nematodes identified by comparative genomics. Molecular Genetics and Genomics, 295 (4), 1063-1078. ISSN 1617-4615.
Identifiant IRD :
fdi:010079030
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Ngan Thi Phan, Orjuela J., Danchin E. G. J., Klopp C., Perfus-Barbeoch L., Kozlowski D. K., Koutsovoulos G. D., Lopez-Roques C., Bouchez O., Zahm M., Besnard G., Bellafiore Stéphane. (2020). Genome structure and content of the rice root-knot nematode (Meloidogyne graminicola). Ecology and Evolution, 10 (20), 11006-11021. ISSN 2045-7758.
Identifiant IRD :
fdi:010079696
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Nguyen T. H., To Thi Mai H., Moukouanga Daniel, Lebrun Michel, Bellafiore Stéphane, Champion Antony. (2020). CRISPR/Cas9-mediated gene editing of the jasmonate biosynthesis OsAOC gene in rice. In :
Champion Antony (ed.), Laplaze Laurent (ed.). Jasmonate in plant biology : methods and protocols. New York : Humana Press, 199-209. (Methods in Molecular Biology). ISBN 978-1-0716-0141-9.
Identifiant IRD :
fdi:010082340
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Orozco-Arias S., Pina J. S., Tabares-Soto R., Castillo-Ossa L. F., Guyot Romain, Isaza G. (2020). Measuring performance metrics of machine learning algorithms for detecting and classifying transposable elements. Processes, 8 (6), p. art. 638 [18p.].
Identifiant IRD :
fdi:010079425
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Orozco-Arias S., Tobon-Orozco N., Pina J. S., Jimenez-Varon C. F., Tabares-Soto R., Guyot Romain. (2020). TIP_finder : an HPC software to detect transposable element insertion polymorphisms in large genomic datasets. Biology, 9 (9), p. 281 [17 p.].
Identifiant IRD :
fdi:010079857
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Petitot Anne-Sophie, Dereeper Alexis, Da Silva C., Guy J., Fernandez Diana. (2020). Analyses of the root-knot nematode (Meloidogyne graminicola) transcriptome during host infection highlight specific gene expression profiling in resistant rice plants. Pathogens, 9 (8), p. 644 [22 p.].
Identifiant IRD :
fdi:010079570
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Ramirez E., Dereeper Alexis, Bernal A., Szurek Boris, Lopez C. (2020). Resistance and susceptibility to Xanthomonas phaseoli pv. manihotis in cassava : a transcriptomic comparison (or two sides of the same coin). Physiological and Molecular Plant Pathology, 112, p. 101535 [11 p.]. ISSN 0885-5765.
Identifiant IRD :
fdi:010080460
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Read A. C., Hutin Mathilde, Moscou M. J., Rinaldi F. C., Bogdanove A. J. (2020). Cloning of the rice Xo1 resistance gene and interaction of the Xo1 protein with the defense-suppressing Xanthomonas effector Tal2h. Molecular Plant-Microbe Interactions, 33 (10), p. 1189-1195. ISSN 0894-0282.
Identifiant IRD :
fdi:010079810
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Rimlinger A., Raharimalala N., Letort V., Rakotomalala J. J., Crouzillat D., Guyot Romain, Hamon Perla, Sabatier S. (2020). Phenotypic diversity assessment within a major ex situ collection of wild endemic coffees in Madagascar. Annals of Botany, 126 (5), p. 849-863. ISSN 0305-7364.
Identifiant IRD :
fdi:010080405
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Roman-Reyna V., Luna E. K., Pesce C., Vancheva T., Chang C., Ziegle J., Bragard C., Koebnik Ralf, Lang J. M., Leach J. E., Jacobs J. M. (2020). Genome resource of barley bacterial blight and leaf streak pathogen Xanthomonas translucens pv. translucens strain UPB886. Plant Disease, 104 (1), p. 13-15. ISSN 0191-2917.
Identifiant IRD :
fdi:010078036
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Roy L., Taudiere A., Papaix J., Blatrix R., Chiron G., Zriki G., Bonato Olivier, Barnagaud J. Y. (2020). Evaluating the link between predation and pest control services in the mite world. Ecology and Evolution, 10 (18), 9968-9980. ISSN 2045-7758.
Identifiant IRD :
fdi:010079516
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Simonin Marie, Dasilva C., Terzi V., Ngonkeu E. L. M., Diouf D., Kane A., Béna Gilles, Moulin Lionel. (2020). Influence of plant genotype and soil on the wheat rhizosphere microbiome : evidences for a core microbiome across eight African and European soils. FEMS Microbiology Ecology, 96 (6), p. fiaa067 [18 p.]. ISSN 0168-6496.
Identifiant IRD :
fdi:010079588
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Struelens Quentin, Silvie Pierre. (2020). Orienting insecticide research in the tropics to meet the sustainable development goals. In :
Dangles Olivier (ed.), Crespo-Pérez V. (ed.). Special section on insects and the UN sustainable development goals. Current Opinion in Insect Science, 40, 24-30. ISSN 2214-5745.
Identifiant IRD :
fdi:010079724
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Tall H., Aribi Jamel, Camara S., Galzi Agnès, Poulicard Nils, Fargette Denis, Hébrard Eugénie. (2020). Near-complete genome sequences of rice yellow mottle virus isolates from Senegal. Microbiology Resource Announcements, 9 (2), p. e00937-19 [3 p.]. ISSN 2576-098X.
Identifiant IRD :
fdi:010077780
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Tall H., Tekete C., Noba K., Koita O., Cunnac Sébastien, Hutin Mathilde, Szurek Boris, Verdier Valérie. (2020). Confirmation report of bacterial blight caused by Xanthomonas oryzae pv. oryzae on rice in Senegal. Plant Disease, 104 (3), p. 968-968. ISSN 0191-2917.
Identifiant IRD :
fdi:010079688
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Tekete C., Cunnac Sébastien, Doucouré H., Dembele M., Keita I., Sarra S., Dagno K., Koita O., Verdier Valérie. (2020). Characterization of new races of Xanthomonas oryzae pv. oryzae in Mali informs resistance gene deployment. Phytopathology, 110 (2), p. 267-277. ISSN 0031-949X.
Identifiant IRD :
fdi:010077878
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Teulet Albin, Gully Djamel, Rouy Z., Camuel A., Koebnik Ralf, Giraud Eric, Lassalle F. (2020). Phylogenetic distribution and evolutionary dynamics of nod and T3SS genes in the genus Bradyrhizobium. Microbial Genomics, 6 (9), p. 000407 [18 p.]. ISSN 2057-5858.
Identifiant IRD :
fdi:010079809
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Tibiri E. B., Pita J. S., Tiendrebeogo F., Bangratz Martine, Neya J. B., Brugidou Christophe, Some K., Barro N. (2020). Characterization of virus species associated with sweetpotato virus diseases in Burkina Faso. Plant Pathology, 69 (6), 1003-1017. ISSN 0032-0862.
Identifiant IRD :
fdi:010079034
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Wu S. Y., Guyot Romain, Bocs S., Droc G., Oktavia F., Hu S. N., Tang C. R., Montoro P., Leclercq J. (2020). Structural and functional annotation of transposable elements revealed a potential regulation of genes involved in rubber biosynthesis by TE-derived siRNA interference in Hevea brasiliensis. International Journal of Molecular Sciences, 21 (12), 4220 [21 p.].
Identifiant IRD :
fdi:010079380
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Zhang Z. J., Liu Y. J., Brunel Caroline, van Kleunen M. (2020). Evidence for Elton's diversity-invasibility hypothesis from belowground. Ecology, 101 (12), e03187 [10 p.]. ISSN 0012-9658.
Identifiant IRD :
fdi:010079792
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Zhang Z. J., Liu Y. J., Brunel Caroline, van Kleunen M. (2020). Soil-microorganism-mediated invasional meltdown in plants. Nature Ecology and Evolution, 4 (12), 1612-1621. ISSN 2397-334X.
Identifiant IRD :
fdi:010079798
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Zuluaga A. P., Bidzinski P., Chanclud E., Ducasse A., Cayrol B., Selvaraj M. G., Ishitani M., Jauneau A., Deslandes L., Kroj T., Michel C., Szurek Boris, Koebnik Ralf, Morel J. B. (2020). The rice DNA-binding protein ZBED controls stress regulators and maintains disease resistance after a mild drought. Frontiers in Plant Science, 11, p. 1265 [15p.]. ISSN 1664-462X.
Identifiant IRD :
fdi:010079565
2019
Articles référencés dans le Web of Science
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Ahmed D., Comte Aurore, Curk F., Costantino G., Luro F., Dereeper Alexis, Mournet P., Froelicher Y., Itrault P. (2019). Genotyping by sequencing can reveal the complex mosaic genomes in gene pools resulting from reticulate evolution : a case study in diploid and polyploid Citrus. Annals of Botany, 123 (7), p. 1231-1251. ISSN 0305-7364.
Identifiant IRD :
fdi:010077188
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Almeida R. P. P., De La Fuente L., Koebnik Ralf, Lopes J. R. S., Parnell S., Scherm H. (2019). Addressing the new global threat of Xylella fastidiosa. Phytopathology, 109 (2), p. 172-174. ISSN 0031-949X.
Identifiant IRD :
fdi:010075152
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Awada R., Campa Claudine, Gibault E., Dechamp E., Georget F., Lepelley M., Abdallah Cécile, Erban A., Martinez-Seidel F., Kopka J., Legendre L., Leran S., Conejero G., Verdeil J. L., Crouzillat D., Breton D., Bertrand B., Etienne H.. (2019). Unravelling the metabolic and hormonal machinery during key steps of somatic embryogenesis : a case study in coffee. International Journal of Molecular Sciences, 20 (19), p. art. 4665 [29 p.].
Identifiant IRD :
fdi:010077310
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Bamogo P. K. A., Brugidou Christophe, Sérémé D., Tiendrébéogo F., Djigma F. W., Simpore J., Lacombe Séverine. (2019). Virus-based pharmaceutical production in plants : an opportunity to reduce health problems in Africa. Virology Journal, 16 (1), p. art. 167 [16 p.].
Identifiant IRD :
fdi:010077928
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Besnard G., Thi-Phan N., Ho-Bich H., Dereeper Alexis, Nguyen H. T., Quénéhervé Patrick, Aribi Jamel, Bellafiore Stéphane. (2019). On the close relatedness of two rice-parasitic root-knot nematode species and the recent expansion of Meloidogyne graminicola in Southeast Asia. Genes, 10 (2), p. art. 175 [16 p.]. ISSN 2073-4425.
Identifiant IRD :
fdi:010075311
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Bresso E., Fernandez Diana, Amora D. X., Noel P., Petitot Anne-Sophie, de Sa M. E. L., Albuquerque E. V. S., Danchin E. G. J., Maigret B., Martins N. F. (2019). A chemosensory GPCR as a potential target to control the root-knot nematode Meloidogyne incognita parasitism in plants. Molecules, 24, p. art. 3798 [22 p.].
Identifiant IRD :
fdi:010077319
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Butchacas J., Pesce C., Vancheva T., Roman-Reyna V., Long J., Bini F., Hensel G., Otto I., Leach J. E., Szurek Boris, Kumlehn J., Bragard C. G., Koebnik Ralf, Jacobs J. M. (2019). Visualization of TAL effector activity in barley host-cells during Xanthomonas tranlsucens leaf infection. Phytopathology, 109 (10 suppl.), p. 157-157. ISSN 0031-949X.
Identifiant IRD :
fdi:010077331
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Caradonia F., Francia E., Morcia C., Ghizzoni R., Moulin Lionel, Terzi V., Ronga D. (2019). Arbuscular mycorrhizal fungi and plant growth promoting rhizobacteria avoid processing tomato leaf damage during chilling stress. Agronomy [CHE), 9 (6), p. art. 299 [20 p.]. ISSN 2073-4395.
Identifiant IRD :
fdi:010076239
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Cerutti A., Jauneau A., Auriac M. C., Butchacas J., Gluck-Thaler E., Slot J., Quintero A. L. P., Koebnik Ralf, Bragard C., Noel L. D., Jacobs J. M. (2019). A single cellobiosidase is required for barley hydathode and xylem colonization by Xanthomonas translucens. Molecular Plant-Microbe Interactions, 32 (Suppl. 10), p. 41. Congress of International Society for Molecular Plant Microbe Interactions (IS-MPMI), 18., Glasgow (GBR), 2019/07/14-18. ISSN 0894-0282.
Identifiant IRD :
PAR00019877
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Daubech B., Poinsot V., Klonowska Agnieszka, Capela D., Chaintreuil Clémence, Moulin Lionel, Marchetti M., Masson-Boivin C. (2019). NoeM, a new nodulation gene involved in the biosynthesis of Nod Factors with an open-chain oxidized terminal residue and in the symbiosis with Mimosa pudica. Molecular Plant-Microbe Interactions, 32 (12), p. 1635-1648. ISSN 0894-0282.
Identifiant IRD :
fdi:010077364
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Daubech B., Poinsot V., Klonowska Agnieszka, Chaintreuil Clémence, Tisseyre Pierre, Moulin Lionel, Marchetti M., Masson-Boivin C. (2019). NoeM, a novel nodulation gene involved in symbiosis with Mimosa pudica. Molecular Plant-Microbe Interactions, 32 (Suppl. 10), p. 193-194. Congress of International Society for Molecular Plant Microbe Interactions (IS-MPMI), 18., Glasgow (GBR), 2019/07/14-18. ISSN 0894-0282.
Identifiant IRD :
PAR00019876
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de Sa M. G., Petitot Anne-Sophie, Mezzalira I., Beneventi M. A., Sa M. E. L., Amora D. X., Lacombe Séverine, Albuquerque E. V. S., de Sa M. F. G., Fernandez Diana. (2019). Host-induced RNAi-based gene silencing (HIGS) in rice for identifying Meloidogyne javanica essential genes for nematode infection. Molecular Plant-Microbe Interactions, 32 (Suppl. 10), p. 147. Congress of International Society for Molecular Plant Microbe Interactions (IS-MPMI), 18., Glasgow (GBR), 2019/07/14-18. ISSN 0894-0282.
Identifiant IRD :
PAR00019875
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dos Santos T. B., Soares J. D. M., Lima J. E., Silva J. C., Ivamoto S. T., Baba V. Y., Souza S. G. H., Lorenzetti A. P. R., Paschoal A. R., Meda A. R., Nishiyama M. Y., de Oliveira U. C., Mokochinski J. B., Guyot Romain, Junqueira-de-Azevedo I. L. M., Figueira A. V. O., Mazzafera P., Junior O. R., Vieira L. G. E., Pereira L. F. P., Domingues D. S. (2019). An integrated analysis of mRNA and sRNA transcriptional profiles in Coffea arabica L. roots: insights on nitrogen starvation responses. Functional and Integrative Genomics, 19 (1), p. 151-169. ISSN 1438-793X.
Identifiant IRD :
fdi:010074847
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Dubrow Z., Lange H., Fuentes I., Audran C., Szurek Boris, Smart C. D., Noel L. D., Bogdanove A. J. (2019). Toward identification of TAL effector targeted susceptibility genes in black rot of cabbage caused by Xanthomonas campestris pv. campestris. Molecular Plant-Microbe Interactions, 32 (Suppl. 10), p. 166. Congress of International Society for Molecular Plant Microbe Interactions (IS-MPMI), 18., Glasgow (GBR), 2019/07/14-18. ISSN 0894-0282.
Identifiant IRD :
PAR00019873
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Eom J. S., Luo D. P., Atienza-Grande G., Yang J., Ji C. H., Luu V. T., Huguet-Tapia J. C., Char S. N., Liu B., Nguyen H., Schmidt S. M., Szurek Boris, Cruz C. V., White F. F., Oliva R., Yang B., Frommer W. B. (2019). Diagnostic kit for rice blight resistance. Nature Biotechnology, 37 (11), p. 1372-1379 + 1 p. ISSN 1087-0156.
Identifiant IRD :
fdi:010077321
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Flores C., Zarate C., Triplett L., Maillot-Lebon V., Moufid Y., Kante M., Bragard C., Verdier Valérie, Gagnevin L., Szurek Boris, Robene I. (2019). Development of a duplex-PCR for differential diagnosis of Xanthomonas phaseoli pv. manihotis and Xanthomonas cassavae in cassava (Manihot esculenta). Physiological and Molecular Plant Pathology, 105 (SI), p. 34-46. ISSN 0885-5765.
Identifiant IRD :
fdi:010075151
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Gluck-Thaler E., Cerutti A., Quintero A. L. P., Pesce C., Jauneau A., Vancheva T., Lang J. M., Allen C., Verdier-Michel V. V., Gagnevin L., Szurek Boris, Cunnac Sébastien, Bragard C., Leach J. E., Noel L. D., Slot J., Koebnik Ralf, Jacobs J. M. (2019). Ebb and flow of vascular pathogenesis through repeated gain and loss of a molecular switch. Molecular Plant-Microbe Interactions, 32 (Suppl. 10), p. 22. Congress of International Society for Molecular Plant Microbe Interactions (IS-MPMI), 18., Glasgow (GBR), 2019/07/14-18. ISSN 0894-0282.
Identifiant IRD :
PAR00019872
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Gomez-Santos N., Glatter T., Koebnik Ralf, Swiatek-Polatynska M. A., Sogaard-Andersen L. (2019). A TonB-dependent transporter is required for secretion of protease PopC across the bacterial outer membrane. Nature Communications, 10, 1360 [18 p.]. ISSN 2041-1723.
Identifiant IRD :
fdi:010075515
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Grossi-de-Sa M., Petitot Anne-Sophie, Xavier D. A., Sa M. E. L., Mezzalira I., Beneventi M. A., Martins N. F., Baimey H. K., Albuquerque E. V. S., Grossi-de-Sa M. F., Fernandez Diana. (2019). Rice susceptibility to root-knot nematodes is enhanced by the Meloidogyne incognita MSP18 effector gene. Planta, 250 (4), p. 1215-1227. ISSN 0032-0935.
Identifiant IRD :
fdi:010077026
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Guyeux C., Charr J. C., Tran H. T. M., Furtado A., Henry R. J., Crouzillat D., Guyot Romain, Hamon Perla. (2019). Evaluation of chloroplast genome annotation tools and application to analysis of the evolution of coffee species. PLOS One, 14 (6), p. e0216347 [20 p.]. ISSN 1932-6203.
Identifiant IRD :
fdi:010076131
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Jeong Kwanho, Munoz-Bodnar A., Rojas N. A., Poulin L., Rodriguez-R L. M., Gagnevin L., Verniere C., Pruvost O., Koebnik Ralf. (2019). CRISPR elements provide a new framework for the genealogy of the citrus canker pathogen Xanthomonas citri pv. citri. BMC Genomics, 20 (1), p. art. 917 [19 p.]. ISSN 1471-2164.
Identifiant IRD :
fdi:010077455
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Juanillas V., Dereeper Alexis, Beaume N., Droc G., Dizon J., Mendoza J. R., Perdon J. P., Mansueto L., Triplett L., Lang J., Zhou G., Ratharanjan K., Plale B., Haga J., Leach J. E., Ruiz M., Thomson M., Alexandrov N., Larmande Pierre, Kretzschmar T., Mauleon R. P. (2019). Rice Galaxy : an open resource for plant science. Gigascience, 8 (5), p. giz028 [14 p.]. ISSN 2047-217X.
Identifiant IRD :
fdi:010076213
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Karim S., McNally R. R., Nasaruddin A. S., Dereeper Alexis, Mauleon R. P., Charkowski A. O., Leach J. E., Ben-Hur A., Triplett L. R. (2019). Development of the automated primer design workflow uniqprimer and diagnostic primers for the broad-host-range plant pathogen Dickeya dianthicola. Plant Disease, 103 (11), p. 2893-2902. ISSN 0191-2917.
Identifiant IRD :
fdi:010077161
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Khenfous-Djebari B., Kerkoud M., Fischer-Le Saux M., Benhassine T., Bouznad Z., Koebnik Ralf, Bragard C. (2019). Isolation of atypical wheat-associated xanthomonads in Algeria. Phytopathologia Mediterranea, 58 (3), p. 497-506. ISSN 0031-9465.
Identifiant IRD :
fdi:010077819
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Khojasteh M., Taghavi S. M., Khodaygan P., Hamzehzarghani H., Chen G. Y., Bragard C., Koebnik Ralf, Osdaghi E. (2019). Molecular typing reveals high genetic diversity of Xanthomonas translucens strains infecting small-grain cereals in Iran. Applied and Environmental Microbiology, 85 (20), e01518 [15 p.]. ISSN 0099-2240.
Identifiant IRD :
fdi:010077135
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King E., Moulin Lionel, Czernic P. (2019). Comparative analysis of rice sensing of plant-beneficial Burkholderia. Molecular Plant-Microbe Interactions, 32 (10 Suppl.), p. 157-157. Congress of International Society for Molecular Plant Microbe Interactions (IS-MPMI), 18., Glagow (GBR), 2019/07/14-18. ISSN 0894-0282.
Identifiant IRD :
PAR00019871
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King E., Wallner A., Rimbault Isabelle, Barrachina C., Klonowska Agnieszka, Moulin Lionel, Czernic P. (2019). Monitoring of rice transcriptional responses to contrasted colonizing patterns of phytobeneficial Burkholderia s.l. reveals a temporal shift in JA systemic response. Frontiers in Plant Science, 10, p. art. 1141 [20 p.]. ISSN 1664-462X.
Identifiant IRD :
fdi:010077044
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Kini K., Dossa R., Dossou B., Mariko M., Koebnik Ralf, Silue D. (2019). A semi-selective medium to isolate and identify bacteria of the genus Pantoea. Journal of General Plant Pathology, 85 (6), p. 424-427. ISSN 1345-2630.
Identifiant IRD :
fdi:010077156
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Klass T. L., Long J. J., Summers J. A., Roman-Reyna V., Koebnik Ralf, Jacobs J. M., Hand F. P. (2019). First report of bacterial blight of peony caused by Xanthomonas hortorum in Ohio. Plant Disease, 103 (11), p. 2940-2941. ISSN 0191-2917.
Identifiant IRD :
PAR00020007
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Lajudie Philippe de, Andrews M., Ardley J., Eardly B., Jumas-Bilak E., Kuzmanovic N., Lassalle R., Lindstrom K., Mhamdi R., Martinez-Romero E., Moulin Lionel, Mousavi S. A., Nesme X., Peix A., Pulawska J., Steenkamp E., Stepkowski T., Tian C. F., Vinuesa P., Wei G. H., Willems A., Zili J., Young P. (2019). Minimal standards for the description of new genera and species of rhizobia and agrobacteria. International Journal of Systematic and Evolutionary Microbiology, 69 (7), p. 1852-1863. ISSN 1466-5026.
Identifiant IRD :
fdi:010076181
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Lang J. M., Perez-Quintero A. L., Koebnik Ralf, DuCharme E., Sarra S., Doucoure H., Keita I., Ziegle J., Jacobs J. M., Oliva R., Koita O., Szurek Boris, Verdier Valérie, Leach J. E. (2019). A Pathovar of Xanthomonas oryzae infecting wild grasses provides insight into the evolution of pathogenicity in rice agroecosystems. Frontiers in Plant Science, 10, 507 [15 p.]. ISSN 1664-462X.
Identifiant IRD :
fdi:010075656
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Lecorre F., Lai-Kee-Him J., Blanc S., Zeddam Jean-Louis, Trapani S., Bron P. (2019). The cryo-electron microscopy structure of Broad Bean Stain Virus suggests a common capsid assembly mechanism among comoviruses. Virology, 530, p. 75-84. ISSN 0042-6822.
Identifiant IRD :
fdi:010075598
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Lorenzo M. E., Bao L., Mendez L., Grille G., Bonato Olivier, Basso C. (2019). Effect of two oviposition feeding substrates on Orius insidiosus and Orius tristicolor (Hemiptera : Anthocoridae). Florida Entomologist, 102 (2), p. 395-402. ISSN 0015-4040.
Identifiant IRD :
fdi:010076121
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Mangel N., Fudge J. B., Li K. T., Wu T. Y., Tohge T., Fernie A. R., Szurek Boris, Fitzpatrick T. B., Gruissem W., Vanderschuren H. (2019). Enhancement of vitamin B-6 levels in rice expressing Arabidopsis vitamin B-6 biosynthesis de novo genes. Plant Journal, 99 (6), 1047-1065. ISSN 0960-7412.
Identifiant IRD :
fdi:010076519
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Mantelin S., Thi H. N., Ho-Bich H., Armstrong M. R., Xiong L., Jones J. T., Hein I., Bellafiore Stéphane. (2019). Towards the characterisation of a novel resistance gene to control the rice root-knot nematode. Molecular Plant-Microbe Interactions, 32 (Suppl. 10), p. 146. Congress of International Society for Molecular Plant Microbe Interactions (IS-MPMI), 18., Glasgow (GBR), 2019/07/14-18. ISSN 0894-0282.
Identifiant IRD :
PAR00019870
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Mattos V. D., Mulet K., Cares J. E., Gomes C. B., Fernandez Diana, de Sa M. F. G., Carneiro R. M. D. G., Castagnone-Sereno P. (2019). Development of diagnostic SCAR markers for Meloidogyne graminicola, M-oryzae, and M-salasi associated with irrigated rice fields in Americas. Plant Disease, 103 (1), p. 83-88. ISSN 0191-2917.
Identifiant IRD :
fdi:010074863
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Nguyen H. T., To H. T. M., Lebrun Michel, Bellafiore Stéphane, Champion Antony. (2019). Jasmonates : the master regulator of rice development, adaptation and defense. Plants, 8 (9), 339 [19 p.].
Identifiant IRD :
fdi:010077082
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Oliva R., Ji C. H., Atienza-Grande G., Huguet-Tapia J. C., Perez-Quintero A., Li T., Eom J. S., Li C. H., Nguyen H., Liu B., Auguy Florence, Sciallano C., Luu V., Dossa G. S., Cunnac Sébastien, Schmidt S. M., Slamet-Loedin I. H., Cruz C. V., Szurek Boris, Frommer W. B., White F. F., Yang B. (2019). Broad-spectrum resistance to bacterial blight in rice using genome editing. Nature Biotechnology, 37 (11), p. 1344-1350 + 1 p. ISSN 1087-0156.
Identifiant IRD :
fdi:010077322
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Orozco-Arias S., Isaza G., Guyot Romain. (2019). Retrotransposons in plant genomes : structure, identification, and classification through bioinformatics and machine learning. International Journal of Molecular Sciences, 20 (15), p. art. 3837 [31 p.]. ISSN 1661-6596.
Identifiant IRD :
fdi:010076634
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Orozco-Arias S., Isaza G., Guyot Romain, Tabares-Soto R. (2019). A systematic review of the application of machine learning in the detection and classification of transposable elements. PeerJ, 7, p. e8311 [29 p.]. ISSN 2167-8359.
Identifiant IRD :
fdi:010077475
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Perez-Quintero A. L., Szurek Boris. (2019). A decade decoded : spies and hackers in the history of TAL effectors research. Annual Review of Phytopathology, 57, p. 459-481. ISBN 978-0-8243-1357-9.
Identifiant IRD :
fdi:010076641
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Rache L., Blondin L., Flores C., Trujillo C., Szurek Boris, Restrepo S., Koebnik Ralf, Bernal A., Verniere C. (2019). An optimized microsatellite scheme for assessing populations of Xanthomonas phaseoli pv. manihotis. Phytopathology, 109 (5), p. 859-869. ISSN 0031-949X.
Identifiant IRD :
fdi:010076148
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Rakotomalala M., Abera B. B., Rakotoarisoa J., Alemu D., Hébrard Eugénie, Galzi Agnès, Fargette Denis. (2019). Complete genome sequences of rice yellow mottle virus isolates from the Federal Democratic Republic of Ethiopia. Microbiology Resource Announcements, 8 (30), p. e00589-19 [3p.]. ISSN 2576-098X.
Identifiant IRD :
fdi:010076503
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Rakotomalala M., Vrancken B., Galzi Agnès, Ramavovololona P., Hébrard Eugénie, Randrianangaly J. S., Dellicour S., Lemey P., Fargette Denis. (2019). Comparing patterns and scales of plant virus phylogeography : rice yellow mottle virus in Madagascar and in continental Africa. Virus Evolution, 5 (2), p. vez023 [12 p.].
Identifiant IRD :
fdi:010077745
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Rocca J. D., Simonin Marie, Bernhardt E. S., Washburne A. D., Wright J. P. (2019). Rare microbial taxa emerge when communities collide : freshwater and marine microbiome responses to experimental mixing. Ecology, [Early Access], p. e02956 [14 p.]. ISSN 0012-9658.
Identifiant IRD :
fdi:010077886
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Soewarto J., Hamelin C., Bocs S., Mournet P., Vignes H., Berger A., Armero A., Martin G., Dereeper Alexis, Sarah G., Carriconde F., Maggia L. (2019). Transcriptome data from three endemic Myrtaceae species from New Caledonia displaying contrasting responses to myrtle rust (Austropuccinia psidii) [Data paper]. Data in Brief, 22, p. 794-811. ISSN 2352-3409.
Identifiant IRD :
fdi:010075175
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Souza Prado G., Bamogo P. K. A., Cordeiro de Abreu J. A., Gillet F. X., Olinto dos Santos V., Mattar Silva M. C., Brizard Jean-Paul, Porto Bemquerer M., Bangratz Martine, Brugidou Christophe, Sérémé D., Grossi-de-Sa M. F., Lacombe Séverine. (2019). Nicotiana benthamiana is a suitable transient system for high-level expression of an active inhibitor of cotton boll weevil alpha-amylase. BMC Biotechnology, 19, p. art. 15 [13 p.]. ISSN 1472-6750.
Identifiant IRD :
fdi:010075306
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Teulet A., Busset N., Fardoux Joël, Gully Djamel, Chaintreuil Clémence, Cartieaux Fabienne, Jauneau A., Comorge V., Okazaki S., Kaneko T., Gressent F., Nouwen Nico, Arrighi Jean-François, Koebnik Ralf, Mergaert P., Deslandes L., Giraud Eric. (2019). The rhizobial type III effector ErnA confers the ability to form nodules in legumes. Proceedings of the National Academy of Sciences of the United States of America, 116 (43), p. 21758-21768. ISSN 0027-8424.
Identifiant IRD :
fdi:010077167
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Tibiri E. B., Some K., Pita J. S., Tiendrebeogo F., Bangratz Martine, Neya J. B., Brugidou Christophe, Barro N. (2019). Effects of sweet potato feathery mottle virus, sweet potato chlorotic stunt virus and their co-infection on sweet potato yield in Western Burkina Faso. Open Agriculture, 4 (1), p. 758-766. ISSN 2391-9531.
Identifiant IRD :
fdi:010077735
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To H. T. M., Nguyen H. T., Dang N. T. M., Nguyen N. H., Bui T. X., Lavarenne J., Phung N. T. P., Gantet Pascal, Lebrun Michel, Bellafiore Stéphane, Champion Antony. (2019). Unraveling the genetic elements involved in shoot and root growth regulation by jasmonate in rice using a genome-wide association study. Rice, 12 (1), p. art. 69 [18 p.]. ISSN 1939-8425.
Identifiant IRD :
fdi:010076668
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Toniutti L., Breitler J. C., Guittin C., Doulbeau Sylvie, Etienne H., Campa Claudine, Lambot C., Herrera Pinilla J. C., Bertrand B. (2019). An altered circadian clock coupled with a higher photosynthesis efficiency could explain the better agronomic performance of a new coffee clone when compared with a standard variety. International Journal of Molecular Sciences, 20 (3), 736 [19 p.]. ISSN 1422-0067.
Identifiant IRD :
fdi:010075512
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Vidal L. A., Grynberg P., Petitot Anne-Sophie, Mota A. Z., Togawa R., Fernandez Diana, Albuquerque E. V. S. (2019). Involvement of Miraculin-Like Protein genes in the coffee immune response to nematode. Molecular Plant-Microbe Interactions, 32 (Suppl.10), p. 98. Congress of International Society for Molecular Plant Microbe Interactions (IS-MPMI), 18., Glasgow (GBR), 2019/07/14-18. ISSN 0894-0282.
Identifiant IRD :
PAR00019869
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Vincent B., Juillot Farid, Fritsch Emmanuel, Klonowska Agnieszka, Gerbert N., Acherar S., Grangeteau C., Hannibal Laure, Galiana A., Ducousso M., Jourand Philippe. (2019). A leguminous species exploiting alpha- and beta-rhizobia for adaptation to ultramafic and volcano-sedimentary soils : an endemic Acacia spirorbis model from New Caledonia. FEMS Microbiology Ecology, 95 (8), p. fiz099 [15 p.]. ISSN 0168-6496.
Identifiant IRD :
fdi:010076672
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Wallner A., King E., Ngonkeu E. L. M., Moulin Lionel, Béna Gilles. (2019). Genomic analyses of Burkholderia cenocepacia reveal multiple species with differential host-adaptation to plants and humans. BMC Genomics, 20 (1), p. art. 803 [15 p.]. ISSN 1471-2164.
Identifiant IRD :
fdi:010077301
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Wu D. S., von Roepenack-Lahaye E., Buntru M., de Lange O., Schandry N., Perez-Quintero A. L., Weinberg Z., Lowe-Power T. M., Szurek Boris, Michael A. J., Allen C., Schillberg S., Lahaye T. (2019). A plant pathogen type III effector protein subverts translational regulation to boost host polyamine levels. Cell Host and Microbe, 26 (5), p. 638-649+ 5 p. ISSN 1931-3128.
Identifiant IRD :
fdi:010077209
Articles
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Song M., Chapuis Elodie, Leng V., Tivet F., De Waele D., Huê Nguyên Thi, Bellafiore Stéphane. (2019). Impact of a conservation agriculture system on soil characteristics, rice yield, and root-parasitic nematodes in a Cambodian lowland rice field. Journal of Nematology, 51, e2019-85 [15 p.]. ISSN 0022-300X.
Identifiant IRD :
fdi:010080169
Directions d'ouvrages ou de revues
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Sabrié Marie-Lise (dir.), Mourier Thomas (dir.), Lavagne Corinne (dir.), Thivent V., Guérin Isabelle (contrib.), Roubaud François (contrib.), Guilmoto Christophe (contrib.), Razafindrakoto Mireille (contrib.), Pilon Marc (contrib.), Léglise Isabelle (contrib.), Le Meur Pierre-Yves (contrib.), Ouattara Fatoumata (contrib), Seignobos Christian (contrib.), Chauveau Jean-Pierre (contrib.), Léonard Eric (contrib.), Guillaud Dominique (contrib.), Froment Alain (contrib.), Robin Nelly (contrib.), Agier Michel (contrib.), Bava Sophie (contrib.), Desgrées du Loû Annabel (contrib.), Gubert Flore (contrib.), Delaporte E. (contrib.), Jourdain Gonzague (contrib.), Dumont Alexandre (contrib.), Trèche Serge (contrib.), Berger Jacques (contrib.), Traissac Pierre (contrib.), Delaunay Valérie (contrib.), Robert Vincent (contrib.), Darriet Frédéric (contrib.), Sokhna Cheikh (contrib.), Cot Michel (contrib.), Peeters Martine (contrib.), Leroy Eric (contrib.), Desclaux Alice (contrib.), Hougard Jean-Marc (contrib.), Paugy Didier (contrib.), Boussinesq Michel (contrib.), Solano Philippe (contrib.), Missé Dorothée (contrib.), Gouagna Louis-Clément (contrib.), Lemesre Jean-Loup (contrib.), Banuls Anne-Laure (contrib.), Menkes Christophe (contrib.), Mangeas Morgan (contrib.), Sultan Benjamin (contrib.), Condom Thomas (contrib.), Gosset Marielle (contrib.), Janicot Serge (contrib.), Nocquet Jean-Mathieu (contrib.), Le Pennec Jean-Luc (contrib.), Hardy Sébastien (contrib.), Charvis Philippe (contrib.), Hello Yann (contrib.), Bonnet Emmanuel (contrib.), Strady Emilie (contrib.), Point David (contrib.), Ollivier Bernard (contrib.), Biegala Isabelle (contrib.), Feller Christian (contrib.), Valentin Christian (contrib.), Giraud Eric (contrib.), Blanchart Eric (contrib.), Montoroi Jean-Pierre (contrib.), Cecchi Philippe (contrib.), Albergel Jean (contrib.), Vouillamoz Jean-Michel (contrib.), Simonneaux Vincent (contrib.), Boulet Gilles (contrib.), Ruf Thierry (contrib.), Michon Geneviève (contrib.), Boutrais Jean-Baptiste (contrib.), Emperaire Laure (contrib.), Duponnois Robin (contrib.), Boulanger Jean-Philippe (contrib.), Hébrard Eugénie (contrib.), Verdier Valérie (contrib.), Szurek Boris (contrib.), Le Rü Bruno (contrib.), Calatayud Paul-André (contrib.), Dangles Olivier (contrib.), Aberlenc Frédérique (contrib.), Roussos Sevastianos (contrib.), Dobigny Gauthier (contrib.), Legendre Marc (contrib.), Gaertner Daniel (contrib.), Chavance Pierre (contrib.), Bach Pascal (contrib.), Bertrand Arnaud (contrib.), Vialard Jérôme (contrib.), Merle Jacques (contrib.), Voituriez Bruno (contrib.), Bourles Bernard (contrib.), Penven Pierrick (contrib.), Lebel Thierry (contrib.), Mahé Gil (contrib.), Descroix Luc (contrib.), Chevallier Pierre (contrib.), Calmant Stéphane (contrib.), Turcq Bruno (contrib.), Favreau Adrien (contrib.), Rajot Jean-Louis (contrib.), Pélissier Raphaël (contrib.), Cury Philippe (contrib.), Rodolfo-Metalpa Riccardo (contrib.), Tricornot Hervé de (contrib.), Simard Frédéric (contrib.), Etard Jean-François (contrib.), Taverne Bernard (contrib.), Fournet Florence (contrib.), Drogoul Alexis (contrib), Souris Marc (contrib.), Simier Monique (contrib.), Bonnin Marie (contrib.), Ghesquière Alain (contrib.), Hamon Serge (contrib.), Vigouroux Yves (contrib.), Gonzalez Sophie (contrib.), Molino Jean-François (contrib.), Bourdy Geneviève (contrib.), Moretti Christian (contrib.), Ottino Garanger Pierre (contrib.), Valdez Francisco (contrib.), Antheaume Benoît (contrib.), Gratiot Nicolas (contrib.). (2019). Science et développement durable : 75 ans de recherche au Sud.
Marseille : IRD, 224 p. ISBN 978-2-7099-2737-6.
Identifiant IRD :
fdi:010075823
Chapitres ou parties d'ouvrages
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Bertrand B., Breitler J.C., Georget F., Penot E., Bordeaux M., Marraccini P., Léran S., Campa Claudine, Bonato Olivier, Villain L., Etienne H.. (2019). New varieties for innovative agroforestry coffee systems. In :
Côte F.X. (ed.), Poirier-Magona E. (ed.), Perret S. (ed.), Roudier P. (ed.), Rapidel B. (ed.), Thirion M.C. (ed.). The agroecological transition of agricultural systems in the global South. Versailles : Quae, p. 161-176. (Agricultures et Défis du Monde). ISBN 978-2-7592-3057-0.
Identifiant IRD :
fdi:010076443
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Bertrand B., Breitler J.C., Georget F., Penot E., Bordeaux M., Marraccini P., Léran S., Campa Claudine, Bonato Olivier, Villain L., Etienne H.. (2019). De nouvelles variétés pour des systèmes caféiers agroforestiers innovants. In :
Côte F.X. (ed.), Poirier-Magona E. (ed.), Perret S. (ed.), Roudier P. (ed.), Rapidel B. (ed.), Thirion M.C. (ed.). La transition agro-écologique des agricultures du Sud. Versailles : Quae, p. 165-180 [p. 203-255 - éd. en ligne]. (Agricultures et Défis du Monde). ISBN 978-2-7592-2822-5.
Identifiant IRD :
fdi:010078434
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Hébrard Eugénie (contrib.), Thivent V. (2019). Première cartographie de la panachure du riz. In :
Sabrié Marie-Lise (dir.), Mourier Thomas (dir.), Lavagne Corinne (dir.). Science et développement durable : 75 ans de recherche au Sud. Marseille : IRD, p. 140. ISBN 978-2-7099-2737-6.
Identifiant IRD :
fdi:010089264
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Verdier Valérie (contrib.), Szurek Boris (contrib.), Thivent V. (2019). Du manioc et des bactéries en héritage. In :
Sabrié Marie-Lise (dir.), Mourier Thomas (dir.), Lavagne Corinne (dir.). Science et développement durable : 75 ans de recherche au Sud. Marseille : IRD, p. 141. ISBN 978-2-7099-2737-6.
Identifiant IRD :
fdi:010089265
Thèses, mémoires, diplômes
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Chapuis Elodie. (2019). Variabilité des traits d'histoire de vie entre populations : expériences éco-évolutives de l'adaptation : dossier de synthèse.
Montpellier : IRD ; Université Paul Valéry Montpellier 3, 56 p. HDR.Habilitation à Diriger des Recherches, Université Paul Valéry Montpellier 3.
Identifiant IRD :
fdi:010081751
2018
Articles référencés dans le Web of Science
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Adego A. K., Poulicard Nils, Galzi Agnès, Mukoye B., Fargette Denis, Were H. K., Hébrard Eugénie. (2018). Full-length genome sequences of recombinant and nonrecombinant sympatric strains of rice yellow mottle virus from Western Kenya. Microbiology Resource Announcements, 6 (8), p. e01508-17 [2p.]. ISSN 2576-098X.
Identifiant IRD :
fdi:010074757
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Aribi Jamel, Ribière William, Villain L., Anthony François. (2018). Screening of wild coffee (coffea spp.) for resistance to meloidogyne incognita race 1. Nematropica, 48 (1), p. 5-14. ISSN 0099-5444.
Identifiant IRD :
fdi:010074038
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Bezrutczyk M., Yang J. I., Eom J. S., Prior M., Sosso D., Hartwig T., Szurek Boris, Oliva R., Vera-Cruz C., White F. F., Yang B., Frommer W. B. (2018). Sugar flux and signaling in plant-microbe interactions. Plant Journal, 93 (4), p. 675-685. ISSN 0960-7412.
Identifiant IRD :
fdi:010072071
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Bonato Olivier, Chadoeuf J. (2018). Arthropods life cycle and temperature : beyond isomorphy hypothesis. Journal of Thermal Biology, 75, p. 1-6. ISSN 0306-4565.
Identifiant IRD :
fdi:010073673
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Bonel N., Noel E., Janicke T., Sartori K., Chapuis Elodie, Segard Adeline, Meconcelli S., Pelissie B., Sarda V., David P. (2018). Asymmetric evolutionary responses to sex-specific selection in a hermaphrodite. Evolution, 72 (10), p. 2181-2201. ISSN 0014-3820.
Identifiant IRD :
fdi:010074379
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Bossa-Castro A. M., Tekete C., Raghavan C., Delorean E., Dereeper Alexis, Verdier Valérie, Dagno K., Koita O., Mosquera G. M., Leung H., Leach J. E. (2018). Broad-spectrum resistance and susceptibility to bacterial blight and bacterial leaf streak of rice. Phytopathology, 108 (10), p. 172-172. ICPP.International Congress of Plant Pathology, Boston (USA), 2018/07/29-2018/08/03. ISSN 0031-949X.
Identifiant IRD :
fdi:010074423
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Bossa-Castro A. M., Tekete C., Raghavan C., Delorean E. E., Dereeper Alexis, Dagno K., Koita O., Mosquera G., Leung H., Verdier Valérie, Leach J. E. (2018). Allelic variation for broad-spectrum resistance and susceptibility to bacterial pathogens identified in a rice MAGIC population. Plant Biotechnology Journal, 16 (9), p. 1559-1568. ISSN 1467-7644.
Identifiant IRD :
fdi:010073768
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Bournaud C., James E. K., de Faria S. M., Lebrun Michel, Melkonian R., Duponnois Robin, Tisseyre Pierre, Moulin Lionel, Prin Y. (2018). Interdependency of efficient nodulation and arbuscular mycorrhization in Piptadenia gonoacantha, a Brazilian legume tree. Plant Cell and Environment, 41 (9), p. 2008-2020. ISSN 0140-7791.
Identifiant IRD :
fdi:010073803
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Breitler J. C., Dechamp E., Campa Claudine, Rodrigues L. A. Z., Guyot Romain, Marraccini P., Etienne H.. (2018). CRISPR/Cas9-mediated efficient targeted mutagenesis has the potential to accelerate the domestication of Coffea canephora. Plant Cell Tissue and Organ Culture, 134 (3), p. 383-394. ISSN 0167-6857.
Identifiant IRD :
fdi:010073769
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Brottier Laurent, Chaintreuil Clémence, Simion P., Scornavacca C., Rivallan R., Mournet P., Moulin Lionel, Lewis G. P., Fardoux Joël, Brown S. C., Gomez-Pacheco M., Bourges M., Hervouet C., Gueye M., Duponnois Robin, Ramanankierana H., Randriambanona H., Vandrot H., Zabaleta M., DasGupta M., D'Hont A., Giraud Eric, Arrighi Jean-François. (2018). A phylogenetic framework of the legume genus Aeschynomene for comparative genetic analysis of the Nod-dependent and Nod-independent symbioses. BMC Plant Biology, 18, p. art. 333 [15 p.]. ISSN 1471-2229.
Identifiant IRD :
fdi:010074749
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Cabasan M. T. N., Kumar A., Bellafiore Stéphane, De Waele D. (2018). Reproductive, pathogenic and genotypic characterisation of five Meloidogyne graminicola populations from the Philippines on susceptible and resistant rice varieties. Nematology, 20 (4), p. 299-318. ISSN 1388-5545.
Identifiant IRD :
fdi:010072783
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Chambault P., de Thoisy B., Huguin M., Martin J., Bonola M., Etienne D., Gresser J., Hielard G., Mailles J., Vedie F., Barnerias C., Sutter E., Guillemot B., Dumont-Dayot E., Regis S., Lecerf N., Lefebvre F., Frouin C., Aubert N., Guimera C., Bordes R., Thieulle L., Duru M., Bouaziz M., Pinson A., Flora F., Quénéhervé Patrick, Woignier T., Allenou J. P., Cimiterra N., Benhalilou A., Murgale C., Maillet T., Rangon Luc, Chanteux N., Chanteur B., Beranger C., Le Maho Y., Petit O., Chevallier D. (2018). Connecting paths between juvenile and adult habitats in the Atlantic green turtle using genetics and satellite tracking. Ecology and Evolution, 8 (24), p. 12790-12802. ISSN 2045-7758.
Identifiant IRD :
fdi:010074846
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Charon J., Barra A., Walter J., Millot P., Hébrard Eugénie, Moury B., Michon T. (2018). First experimental assessment of protein intrinsic disorder involvement in an RNA virus natural adaptive process. Molecular Biology and Evolution, 35 (1), p. 38-49. ISSN 0737-4038.
Identifiant IRD :
fdi:010071980
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Chen N. W. G., Serres-Giardi L., Ruh M., Briand M., Bonneau S., Darrasse A., Barbe V., Gagnevin L., Koebnik Ralf, Jacques M. A. (2018). Horizontal gene transfer plays a major role in the pathological convergence of Xanthomonas lineages on common bean. BMC Genomics, 19, p. art. 606 [20 p.]. ISSN 1471-2164.
Identifiant IRD :
fdi:010073720
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Clerissi C., Touchon M., Capela D., Tang M. X., Cruveiller S., Parker M. A., Moulin Lionel, Masson-Boivin C., Rocha E. P. C. (2018). Parallels between experimental and natural evolution of legume symbionts [+ Corrigendum no 4641 du 02 nov. 2018]. Nature Communications, 9, art. 2264 [13 p. + corrigendum 4641 du 02 nov. 2018]. ISSN 2041-1723.
Identifiant IRD :
fdi:010073111
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de Castro Nunes R., Orozco-Arias S., Crouzillat D., Mueller L. A., Strickler S. R., Descombes P., Fournier C., Moine D., Kochko Alexandre de, Yuyama P. M., Vanzela A. L. L., Guyot Romain. (2018). Structure and distribution of centromeric retrotransposons at diploid and allotetraploid Coffea centromeric and pericentromeric regions. Frontiers in Plant Science, 9, p. art. 175 [14p.]. ISSN 1664-462X.
Identifiant IRD :
fdi:010072372
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De Meyer S. E., Cnockaert M., Moulin Lionel, Howieson J. G., Vandamme P. (2018). Symbiotic and non-symbiotic Paraburkholderia isolated from South African Lebeckia ambigua root nodules and the description of Paraburkholderia fynbosensis sp. nov.. International Journal of Systematic and Evolutionary Microbiology, 68 (8), p. 2607-2614. ISSN 1466-5026.
Identifiant IRD :
fdi:010073959
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Dekkiche S., Benguedouar A., Sbabou L., Taha K., Filali-Maltouf A., Béna Gilles. (2018). Chickpea (Cicer arietinum) is nodulated by unexpected wide diversity of Mesorhizobium species in Eastern Algeria. Archives of Agronomy and Soil Science, 64 (2), p. 285-297. ISSN 0365-0340.
Identifiant IRD :
fdi:010071968
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Dellicour S., Vrancken B., Trovao N. S., Fargette Denis, Lemey P. (2018). On the importance of negative controls in viral landscape phylogeography. Virus Evolution, 4 (2), p. vey023 [9 p.]. ISSN 2057-1577.
Identifiant IRD :
fdi:010074954
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Denance N., Szurek Boris, Doyle E. L., Lauber E., Fontaine-Bodin L., Carrere S., Guy E., Hajri A., Cerutti A., Boureau T., Poussier S., Arlat M., Bogdanove A. J., Noel L. D. (2018). Two ancestral genes shaped the Xanthomonas campestris TAL effector gene repertoire. New Phytologist, 219 (1), p. 391-407. ISSN 0028-646X.
Identifiant IRD :
fdi:010073676
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Doucoure H., Perez-Ouintero A. L., Reshetnyak G., Tekete C., Auguy Florence, Thomas E., Koebnik Ralf, Szurek Boris, Koita O., Verdier Valérie, Cunnac Sébastien. (2018). Functional and genome sequence-driven characterization of TAL effector gene repertoires reveals novel variants with altered specificities in closely related Malian Xanthomonas oryzae pv. oryzae strains. Frontiers in Microbiology, 9, 1657 [17 p.]. ISSN 1664-302X.
Identifiant IRD :
fdi:010073730
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Etienne H., Breton D., Breitler J. C., Bertrand B., Dechamp E., Awada R., Marraccini P., Leran S., Alpizar E., Campa Claudine, Courtel P., Georget F., Ducos J. P. (2018). Coffee somatic embryogenesis : how did research, experience gained and innovations promote the commercial propagation of elite clones from the two cultivated species ?. Frontiers in Plant Science, 9, p. art. 1630 [21 p.]. ISSN 1664-462X.
Identifiant IRD :
fdi:010074410
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Fernandez Diana, Hofte M., Huckelhoven R., Reignault P., Sache I., Siah A. (2018). Special issue "Deepen knowledge in plant pathology for innovative agroecology" [Foreword]. European Journal of Plant Pathology, 152 (4), p. 853-854. EFPP (European Foundation for Plant Pathology) - SFP (French Society for Phytopathology) Joint Conference, 12.-10., Malo-les-Bains (FRA), 2017/05/34-2017/06/02. ISSN 0929-1873.
Identifiant IRD :
fdi:010074752
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Fiorilli V., Vannini C., Ortolani F., Garcia-Seco D., Chiapello M., Novero M., Domingo G., Terzi V., Morcia C., Bagnaresi P., Moulin Lionel, Bracale M., Bonfante P. (2018). Omics approaches revealed how arbuscular mycorrhizal symbiosis enhances yield and resistance to leaf pathogen in wheat. Scientific Reports - Nature, 8, p. art. 9625 [ p.]. ISSN 2045-2322.
Identifiant IRD :
fdi:010073182
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Galzi Agnès, Hébrard Eugénie, Traoré O., Silué D., Albar Laurence. (2018). Protocol for RYMV inoculation and resistance evaluation in rice seedlings. Bio-Protocol, 8 (11), e2863 [13 p.].
Identifiant IRD :
fdi:010075169
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Garcia-Gonzalez T., Saenz-Hidalgo H. K., Silva-Rojas H. V., Morales-Nieto C., Vancheva T., Koebnik Ralf, Avila-Quezada G. D. (2018). Enterobacter cloacae, an emerging plant-pathogenic bacterium affecting chili pepper seedlings. Plant Pathology Journal, 34 (1), p. 1-10. ISSN 1598-2254.
Identifiant IRD :
fdi:010072072
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Grossi de Sa M., Petitot Anne-Sophie, Lisei de Sa M. E., Mezzalira I., Beneventi M. A., Amora D. X., Albuquerque E. V. S., Grossi de Sa M. F., Fernandez Diana. (2018). Functional analysis of the MSP18 root-knot nematode virulence gene in rice. Phytopathology, 108 (10), p. 211-2011. ICPP.International Congress of Plant Pathology, Boston (USA), 2018/07/29-2018/08/03. ISSN 0031-949X.
Identifiant IRD :
fdi:010074424
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Grynberg P., Petitot Anne-Sophie, Mota A., Togawa R., Fernandez Diana, Albuquerque E. V. S. (2018). Towards deciphering host resistance to phytonematodes : transcriptome analysis of a coffee incompatible response to Meloidogyne incognita. Phytopathology, 108 (10), p. 246-246. ICPP.International Congress of Plant Pathology, Boston (USA), 2018/07/29-2018/08/03. ISSN 0031-949X.
Identifiant IRD :
fdi:010074425
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Habibi P., Soccol C. R., O'Keefe B. R., Krumpe L. R. H., Wilson J., de Macedo L. L. P., Faheem M., Dos Santos V. O., Prado G. S., Botelho M. A., Lacombe Séverine, Grossi-de-Sa M. F. (2018). Gene-silencing suppressors for high-level production of the HIV-1 entry inhibitor griffithsin in Nicotiana benthamiana. Process Biochemistry, 70, p. 45-54. ISSN 1359-5113.
Identifiant IRD :
fdi:010073624
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Hébrard Eugénie, Galzi Agnès, Oludare A., Poulicard Nils, Aribi Jamel, Fabre S., Issaka S., Mariac Cédric, Dereeper Alexis, Albar Laurence, Silue D., Fargette Denis. (2018). Identification of a hypervirulent pathotype of Rice yellow mottle virus : a threat to genetic resistance deployment in West-Central Africa. Phytopathology, 108 (2), p. 299-307. ISSN 0031-949X.
Identifiant IRD :
fdi:010072488
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Hébrard Eugénie, Galzi Agnès, Oludare A., Poulicard Nils, Aribi Jamel, Fabre S., Issaka S., Mariac Cédric, Dereeper Alexis, Albar Laurence, Silue D., Fargette Denis. (2018). Identification of a hypervirulent pathotype of Rice yellow mottle virus : a threat to genetic resistance deployment in West-Central Africa. Phytopathology, 108 (10), p. 303-303. ICPP.International Congress of Plant Pathology, Boston (USA), 2018/07/29-2018/08/03. ISSN 0031-949X.
Identifiant IRD :
fdi:010074426
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Hily J. M., Demaneche S., Poulicard Nils, Tannieres M., Djennane S., Beuve M., Vigne E., Demangeat G., Komar V., Gertz C., Marmonier A., Hemmer C., Vigneron S., Marais A., Candresse T., Simonet P., Lemaire O. (2018). Metagenomic-based impact study of transgenic grapevine rootstock on its associated virome and soil bacteriome. Plant Biotechnology Journal, 16 (1), p. 208-220. ISSN 1467-7644.
Identifiant IRD :
fdi:010072009
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Kante M., Blondin L., Flores C. M., Cardenal L. Y. R., Wonni I., Dagno K., Restrepo S., Bernal A. J., Koebnik Ralf, Verdier Valérie, Koita O., Vernière C., Szurek Boris. (2018). MLVA-based diversity analysis of Xanthomonas axonopodis pv. manihotis (Xam) populations in Mali. Phytopathology, 108 (10), p. 88-88. ICPP.International Congress of Plant Pathology, Boston (USA), 2018/07/29-2018/08/03. ISSN 0031-949X.
Identifiant IRD :
fdi:010074422
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Karim S., McNally R. R., Dereeper Alexis, Charkowski A. O., Triplett L. R. (2018). Automated primer design for DNA-based detection of the emerging potato pathogen Dickeya dianthicola. Phytopathology, 108 (10), p. 72-72. ICPP.International Congress of Plant Pathology, Boston (USA), 2018/07/29-2018/08/03. ISSN 0031-949X.
Identifiant IRD :
fdi:010074421
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Klonowska Agnieszka, Melkonian R., Miché L., Tisseyre Pierre, Moulin Lionel. (2018). Transcriptomic profiling of Burkholderia phymatum STM815, Cupriavidus taiwanensis LMG19424 and Rhizobium mesoamericanum STM3625 in response to Mimosa pudica root exudates illuminates the molecular basis of their nodulation competitiveness and symbiotic evolutionary history. BMC Genomics, 19, art. no 105 [22 p. ]. ISSN 1471-2164.
Identifiant IRD :
fdi:010076445
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Lacombe Séverine, Bangratz Martine, Brizard Jean-Paul, Petitdidier Elodie, Pagniez Julie, Sérémé D., Lemesre Jean-Loup, Brugidou Christophe. (2018). Optimized transitory ectopic expression of promastigote surface antigen protein in Nicotiana benthamiana, a potential anti-leishmaniasis vaccine candidate. Journal of Bioscience and Bioengineering, 125 (1), p. 116-123. ISSN 1389-1723.
Identifiant IRD :
fdi:010072392
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Leach J. E., Bossa-Castro A. M., Huerta A. I., Delorean E., Raghavan C., Tekete C., Dereeper Alexis, Tonnessen B. W., Koita O., Mosquera G. M., Leung H., Verdier Valérie. (2018). Quantitative resistance to bacterial pathogens of rice. Phytopathology, 108 (10), p. 316-316. ICPP.International Congress of Plant Pathology, Boston (USA), 2018/07/29-2018/08/03. ISSN 0031-949X.
Identifiant IRD :
fdi:010074428
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Niviere M., Chambault P., Perez T., Etienne D., Bonola M., Martin J., Barnerias C., Vedie F., Mailles J., Dumont-Dayot E., Gresser J., Hielard G., Regis S., Lecerf N., Thieulle L., Duru M., Lefebvre F., Milet G., Guillemot B., Bildan B., de Montgolfier B., Benhalilou A., Murgale C., Maillet T., Quénéhervé Patrick, Woignier T., Safi M., Le Maho Y., Petit O., Chevallier D. (2018). Identification of marine key areas across the Caribbean to ensure the conservation of the critically endangered hawksbill turtle. Biological Conservation, 223, p. 170-180. ISSN 0006-3207.
Identifiant IRD :
fdi:010073129
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Osdaghi E., Ansari M., Taghavi S. M., Zarei S., Koebnik Ralf, Lamichhane J. R. (2018). Pathogenicity and phylogenetic analysis of Clavibacter michiganensis strains associated with tomato plants in Iran. Plant Pathology, 67 (4), p. 957-970. ISSN 0032-0862.
Identifiant IRD :
fdi:010072755
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Osdaghi E., Taghavi S. M., Koebnik Ralf, Lamichhane J. R. (2018). Multilocus sequence analysis reveals a novel phylogroup of Xanthomonas euvesicatoria pv. perforans causing bacterial spot of tomato in Iran. Plant Pathology, 67 (7), p. 1601-1611. ISSN 0032-0862.
Identifiant IRD :
fdi:010073771
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Perez-Quintero A. L., Lamy Léo, Zarate C. A., Cunnac Sébastien, Doyle E., Bogdanove A., Szurek Boris, Dereeper Alexis. (2018). DaTALbase : a database for genomic and transcriptomic data related to TAL effectors. Molecular Plant-Microbe Interactions, 31 (4), p. 471-480. ISSN 0894-0282.
Identifiant IRD :
fdi:010072484
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Phan N. T., De Waele D., Lorieux Mathias, Xiong L. Z., Bellafiore Stéphane. (2018). A hypersensitivity-like response to Meloidogyne graminicola in rice (Oryza sativa). Phytopathology, 108 (4), p. 521-528. ISSN 0031-949X.
Identifiant IRD :
fdi:010072489
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Sant'Ana G. C., Pereira L. F. P., Pot D., Ivamoto S. T., Domingues D. S., Ferreira R. V., Pagiatto N. F., da Silva B. S. R., Nogueira L. M., Kitzberger C. S. G., Scholz M. B. S., de Oliveira F. F., Sera G. H., Padilha L., Labouisse J. P., Guyot Romain, Charmetant P., Leroy T. (2018). Genome-wide association study reveals candidate genes influencing lipids and diterpenes contents in Coffea arabica L. Scientific Reports - Nature, 8, p. art. 465 [ 12 p.]. ISSN 2045-2322.
Identifiant IRD :
fdi:010072002
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Schandry N., Jacobs J. M., Szurek Boris, Perez-Quintero A. L. (2018). A cautionary TALE : how plant breeding may have favoured expanded TALE repertoires in Xanthomonas. Molecular Plant Pathology, 19 (6), p. 1297-1301. ISSN 1464-6722.
Identifiant IRD :
fdi:010072848
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Silva M. S., Arraes F. B. M., Campos M. D., Grossi-de-Sa M., Fernandez Diana, Candido E. D., Cardoso M. H., Franco O. L., Grossi-de-Sa M. F. (2018). Potential biotechnological assets related to plant immunity modulation applicable in engineering disease-resistant crops. Plant Science, 270, p. 72-84. ISSN 0168-9452.
Identifiant IRD :
fdi:010072814
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Taha K., Berraho E. B., El Attar I., Dekkiche S., Aurag J., Béna Gilles. (2018). Rhizobium laguerreae is the main nitrogen-fixing symbiont of cultivated lentil (Lens culinaris) in Morocco. Systematic and Applied Microbiology, 41 (2), p. 113-121. ISSN 0723-2020.
Identifiant IRD :
fdi:010072779
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Tran T. T., Doucoure H., Hutin M., Nino L. M. J., Szurek Boris, Cunnac Sébastien, Koebnik Ralf. (2018). Efficient enrichment cloning of TAL effector genes from Xanthomonas. Methodsx, 5, p. 1027-1032. ISSN 2215-0161.
Identifiant IRD :
fdi:010074855
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Tran T. T., Perez-Quintero A. L., Wonni I., Carpenter S. C. D., Yu Y. H., Wang L., Leach J. E., Verdier Valérie, Cunnac Sébastien, Bogdanove A. J., Koebnik Ralf, Hutin M., Szurek Boris. (2018). Functional analysis of African Xanthomonas oryzae pv. oryzae TALomes reveals a new susceptibility gene in bacterial leaf blight of rice. PLoS Pathogens, 14 (6), e1007092 [25 p.]. ISSN 1553-7366.
Identifiant IRD :
fdi:010073703
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Zaka A., Grande G., Coronejo T., Quibod I. L., Chen C. W., Chang S. J., Szurek Boris, Arif M., Cruz C. V., Oliva R. (2018). Natural variations in the promoter of OsSWEET13 and OsSWEET14 expand the range of resistance against Xanthomonas oryzae pv. oryzae. Plos One, 13 (9), p. e0203711 [15 p.]. ISSN 1932-6203.
Identifiant IRD :
fdi:010074067
2017
Articles référencés dans le Web of Science
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Albuquerque E. V. S., Petitot Anne-Sophie, da Silva J. P., Grossi-de-Sa M. F., Fernandez Diana. (2017). Early responses of coffee immunity-related genes to root-knot nematode infection. Physiological and Molecular Plant Pathology, 100, p. 142-150. ISSN 0885-5765.
Identifiant IRD :
fdi:010071901
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Ali N., Tavoillot Johannes, Besnard G., Khadari B., Dmowska E., Winiszewska G., Fossati-Gaschignard O., Ater M., Hamza M. A., El Mousadik A., El Oualkadi A., Moukhli A., Essalouh L., El Bakkali A., Chapuis Elodie, Mateille Thierry. (2017). How anthropogenic changes may affect soil-borne parasite diversity ? Plant-parasitic nematode communities associated with olive trees in Morocco as a case study. BMC Ecology, 17, art. 4 [31 p.]. ISSN 1472-6785.
Identifiant IRD :
fdi:010069321
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Blanvillain-Baufumé Servane, Reschke M., Sole M., Auguy Florence, Doucoure H., Szurek Boris, Meynard D., Portefaix M., Cunnac Sébastien, Guiderdoni E., Boch J., Koebnik Ralf. (2017). Targeted promoter editing for rice resistance to Xanthomonas oryzae pv. oryzae reveals differential activities for SWEET14-inducing TAL effectors. Plant Biotechnology Journal, 15 (3), p. 306-317. ISSN 1467-7644.
Identifiant IRD :
fdi:010069446
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Bournaud C., Moulin Lionel, Cnockaert M., de Faria S., Prin Y., Severac D., Vandamme P. (2017). Paraburkholderia piptadeniae sp. nov. and Paraburkholderia ribeironis sp. nov., two root-nodulating symbiotic species of Piptadenia gonoacantha in Brazil. International Journal of Systematic and Evolutionary Microbiology, 67 (2), 432-440. ISSN 1466-5026.
Identifiant IRD :
fdi:010069466
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Campa Claudine, Petitvallet A., Monkey W. (2017). Beneficial compounds from coffee leaves. In :
Lashermes Philippe (ed.). Achieving sustainable cultivation of coffee : breeding and quality traits. Cambridge : Burleigh Dodds Science Publ., p. 237-258. (Burleigh Dodds Series in Agriculture Science ; 39). ISBN 978-1-78676-152-1. ISSN 2059-6936.
Identifiant IRD :
fdi:010076447
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Campa Claudine, Urban L., Mondolot L., Fabre D., Roques S., Lizzi Y., Aarrouf J., Doulbeau Sylvie, Breitler J. C., Letrez C., Toniutti L., Bertrand B., La Fisca P., Bidel L. P. R., Etienne H. (2017). Juvenile coffee leaves acclimated to low light are unable to cope with a moderate light increase. Frontiers in Plant Science, 8, p. art. 1126 [16 p.]. ISSN 1664-462X.
Identifiant IRD :
fdi:010070373
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Chapuis Elodie, Lamy T., Pointier J. P., Juillet N., Segard A., Jarne P., David P. (2017). Bioinvasion triggers rapid evolution of life histories in freshwater snails. American Naturalist, 190 (5), p. 694-706. ISSN 0003-0147.
Identifiant IRD :
fdi:010071306
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Dall' Agnol R. F., Bournaud C., de Faria S. M., Béna Gilles, Moulin Lionel, Hungria M. (2017). Genetic diversity of symbiotic Paraburkholderia species isolated from nodules of Mimosa pudica (L.) and Phaseolus vulgaris (L.) grown in soils of the Brazilian Atlantic Forest (Mata Atlantica). FEMS Microbiology Ecology, 93 (4), p. fix027 [15 p.]. ISSN 0168-6496.
Identifiant IRD :
fdi:010070311
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David P., Thebault E., Anneville O ., Duyck P.F., Chapuis Elodie, Loeuille N. (2017). Impacts of invasive species on food webs : a review of empirical data. In :
Bohan D.A. (ed.), Dumbrell A.J. (ed.), Massol F. (ed.). Networks of invasion : a synthesis of concepts. Londres : Elsevier, p. 1-60. (Advances in Botanical Research ; 56). ISBN 978-0-12-804331-8. ISSN 0065-2504.
Identifiant IRD :
fdi:010070476
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Dupeyron M., de Souza R. F., Hamon Perla, Kochko Alexandre de, Crouzillat D., Couturon Emmanuel, Domingues D. S., Guyot Romain. (2017). Distribution of Divo in Coffea genomes, a poorly described family of angiosperm LTR-Retrotransposons. Molecular Genetics and Genomics, 292 (4), p. 741-754. ISSN 1617-4615.
Identifiant IRD :
fdi:010070381
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El Adouzi M., Bonato Olivier, Roy L. (2017). Detecting pyrethroid resistance in predatory mites inhabiting soil and litter : an in vitro test. Pest Management Science, 73 (6), p. 1258-1266. ISSN 1526-498X.
Identifiant IRD :
fdi:010070060
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Garcia-Seco D., Chiapello M., Bracale M., Pesce C., Bagnaresi P., Dubois E., Moulin Lionel, Vannini C., Koebnik Ralf. (2017). Transcriptome and proteome analysis reveal new insight into proximal and distal responses of wheat to foliar infection by Xanthomonas translucens. Scientific Reports - Nature, 7, 10157 [ 13 p.]. ISSN 2045-2322.
Identifiant IRD :
fdi:010070966
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Jacobs J. M., Pesce C., Vancheva T., Bini F., Butchacas J., Hensel G., Otto I., Szurek Boris, Kumlehn J., Bragard C. G., Koebnik Ralf. (2017). Live visualization of Type III effector activity in stomata and mesophyll cells by Xanthomonas translucens during leaf infection. Phytopathology, 107 (12), p. 86-86. ISSN 0031-949X.
Identifiant IRD :
fdi:010072352
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Jacobs J. M., Vancheva T., Cerutti A., Lang J. M., Pesce C., Noel L., Allen C., Leach J. E., Szurek Boris, Cunnac Sébastien, Bragard C. G., Koebnik Ralf. (2017). Evolutionary and biological basis of Xanthomonas systemic pathogenesis of plants. Phytopathology, 107 (12), p. 86-86. ISSN 0031-949X.
Identifiant IRD :
fdi:010072351
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Kini K., Agnimonhan R., Afolabi O., Milan B., Soglonou B., Gbogbo V., Koebnik Ralf, Silue D. (2017). First report of a new bacterial leaf blight of rice caused by Pantoea ananatis and Pantoea stewartii in Benin. Plant Disease, 101 (1), p. 242-242. ISSN 0191-2917.
Identifiant IRD :
PAR00015596
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Kini T. K., Agnimonhan R., Afolabi O., Soglonou B., Silue D., Koebnik Ralf. (2017). First report of a new bacterial leaf blight of rice caused by Pantoea ananatis and Pantoea stewartii in Togo. Plant Disease, 101 (1), p. 241-242. ISSN 0191-2917.
Identifiant IRD :
PAR00015595
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Klonowska Agnieszka, Lopez-Lopez A., Moulin Lionel, Ardley J., Gollagher M., Marinova D., Tian R., Huntemann M., Reddy T. B. K., Varghese N., Woyke T., Markowitz V., Ivanova N., Seshadri R., Baeshen M. N., Baeshen N. A., Kyrpides N., Reeve W. (2017). High-quality draft genome sequence of Rhizobium mesoamericanum strain STM6155, a Mimosa pudica microsymbiont from New Caledonia. Standards in Genomic Sciences, 12, art. 7 [11 p.]. ISSN 1944-3277.
Identifiant IRD :
fdi:010068936
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Langlois P. A., Snelling J., Hamilton J. P., Bragard C., Koebnik Ralf, Verdier Valérie, Triplett L. R., Blom J., Tisserat N. A., Leach J. E. (2017). Characterization of the Xanthomonas translucens complex using draft genomes, comparative genomics, phylogenetic analysis, and diagnostic LAMP assays. Phytopathology, 107 (5), p. 519-527. ISSN 0031-949X.
Identifiant IRD :
fdi:010069511
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Little C. J., Chapuis M. P., Blondin L., Chapuis Elodie, Jourdan-Pineau H. (2017). Exploring the relationship between tychoparthenogenesis and inbreeding depression in the Desert Locust, Schistocerca gregaria. Ecology and Evolution, 7 (15), 6003-6011. ISSN 2045-7758.
Identifiant IRD :
fdi:010070875
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Mantelin S., Bellafiore Stéphane, Kyndt T. (2017). Meloidogyne graminicola : a major threat to rice agriculture. Molecular Plant Pathology, 18 (1), p. 3-15. ISSN 1464-6722.
Identifiant IRD :
fdi:010068932
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Mohamad R., Maynaud G., Le Quéré Antoine, Vidal C., Klonowska Agnieszka, Yashiro E., Cleyet-Marel J. C., Brunel B. (2017). Ancient heavy metal contamination in soils as a driver of tolerant Anthyllis vulneraria rhizobial communities. Applied and Environmental Microbiology, 83 (2), p. e01735-16 [13 p.]. ISSN 0099-2240.
Identifiant IRD :
fdi:010069250
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Moury B., Fabre F., Hébrard Eugénie, Froissart R. (2017). Determinants of host species range in plant viruses. Journal of General Virology, 98 (4), p. 862-873. ISSN 0022-1317.
Identifiant IRD :
fdi:010069663
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Pesce C., Jacobs J. M., Berthelot E., Perret Marion, Vancheva T., Bragard C., Koebnik Ralf. (2017). Comparative genomics identifies a novel conserved protein, HpaT, in proteobacterial type III secretion systems that do not possess the putative translocon protein HrpF. Frontiers in Microbiology, 8, 1177 [16 p.]. ISSN 1664-302X.
Identifiant IRD :
fdi:010070223
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Petitot Anne-Sophie, Kyndt T., Haidar R., Dereeper Alexis, Collin Myriam, Engler J. D., Gheysen G., Fernandez Diana. (2017). Transcriptomic and histological responses of African rice (Oryza glaberrima) to Meloidogyne graminicola provide new insights into root-knot nematode resistance in monocots. Annals of Botany, 119 (5), p. 885-899. ISSN 0305-7364.
Identifiant IRD :
fdi:010070039
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Pidon Hélène, Ghesquière Alain, Chéron Sophie, Issaka S., Hébrard Eugénie, Sabot François, Kolade O., Silué D., Albar Laurence. (2017). Fine mapping of RYMV3 : a new resistance gene to Rice yellow mottle virus from Oryza glaberrima. Theoretical and Applied Genetics, 130 (4), 807-818. ISSN 0040-5752.
Identifiant IRD :
fdi:010069515
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Qin G. H., Xu C. Y., Ming R., Tang H. B., Guyot Romain, Kramer E. M., Hu Y. D., Yi X. K., Qi Y. J., Xu X. Y., Gao Z. H., Pan H. F., Jian J. B., Tian Y. P., Yue Z., Xu Y. L. (2017). The pomegranate (Punica granatum L.) genome and the genomics of punicalagin biosynthesis. Plant Journal, 91 (6), p. 1108-1128. ISSN 0960-7412.
Identifiant IRD :
fdi:010070961
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Roy L., El Adouzi M., Moraza M. L., Chiron G., de Janti E. V., Le Peutrec G., Bonato Olivier. (2017). Arthropod communities of laying hen houses : an integrative pilot study toward conservation biocontrol of the poultry red mite Dermanyssus gallinae. Biological Control, 114, p. 176-194. ISSN 1049-9644.
Identifiant IRD :
fdi:010071042
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Tall H., Noba K., Szurek Boris, Cunnac Sébastien, Tekete C., Verdier Valérie. (2017). Report and characterization of bacterial diseases caused by Xanthomonas oryzae in Senegal. Phytopathology, 107 (12), p. 101-101. Annual Meeting the American Phytopathological Society (APS), San Antonio (USA), 2017/08/05-09. ISSN 0031-949X.
Identifiant IRD :
fdi:010072353
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Tollenaere Charlotte, Lacombe Séverine, Wonni I., Barro M., Ndougonna C., Gnacko F., Sérémé D., Jacobs J.M., Hébrard Eugénie, Cunnac Sébastien, Brugidou Christophe. (2017). Virus-bacteria rice co-infection in Africa : field estimation, reciprocal effects, molecular mechanisms, and evolutionary implications. Frontiers in Plant Sciences, 8, 645 [13 p. en ligne]. ISSN 1664-462X.
Identifiant IRD :
fdi:010069662
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Toniutti L., Breitler J. C., Etienne H., Campa Claudine, Doulbeau Sylvie, Urban L., Lambot C., Pinilla J. C. H., Bertrand B. (2017). Influence of environmental conditions and genetic background of Arabica coffee (C. arabica L) on leaf rust (Hemileia vastatrix) pathogenesis. Frontiers in Plant Science, 8, 2025 [12 p.]. ISSN 1664-462X.
Identifiant IRD :
fdi:010071384
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Wang L., Rinaldi F. C., Singh P., Doyle E. L., Dubrow Z. E., Tran T. T., Perez-Quintero A. L., Szurek Boris, Bogdanove A. J. (2017). TAL effectors drive transcription bidirectionally in plants. Molecular Plant, 10 (2), p. 285-296. ISSN 1674-2052.
Identifiant IRD :
fdi:010069388
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Zuluaga P., Szurek Boris, Koebnik Ralf, Kroj T., Morel J. B. (2017). Effector mimics and integrated decoys, the never-ending arms race between rice and Xanthomonas oryzae. Frontiers in Plant Science, 8, p. art. 431 [4 p.]. ISSN 1664-462X.
Identifiant IRD :
fdi:010069419
Articles
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Hamon Perla, Grover C.E., Davis A.P., Rakotomalala J.J., Raharimalala N.E., Albert V.A., Sreenath H.L., Mitchell S.E., Couturon Emmanuel, Hamon Serge, Kochko Alexandre de, Crouzillat D., Rigoreau M., Sumirat U., Akaffou S., Guyot Romain. (2017). Genotyping-by-sequencing provides the first well-resolved phylogeny for coffee (Coffea) and insights into the evolution of caffeine content in its species : GBS coffee phylogeny and the evolution of caffeine content. Molecular Phylogenetics and Evolution, 109, p. 351-361. ISSN 1055-7903.
Identifiant IRD :
fdi:010069165
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Koita K., Neya F.B., Opoku N., Baissac Y., Campa Claudine, Sankara P. (2017). Phytochemical analysis of Ziziphus mucronata Willd. extract and screening for antifungal activity against peanut pathogens. African Journal of Plant Science, 11 (10), 394-402. ISSN 1996-0824.
Identifiant IRD :
fdi:010084094
Directions d'ouvrages ou de revues
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Blanc S. (dir.), Boëtsch G. (dir.), Hossaert-McKey M. (dir.), Renaud F. (dir.), Thiébault S. (préf.), Paupy Christophe (collab.), Simard Frédéric (collab.), Banuls Anne-Laure (collab.), Becquart Pierre (collab.), Chandre Fabrice (collab.), Choisy Marc (collab.), Fargette Denis (collab.), Hébrard Eugénie (collab.), Liégeois Florian (collab.), Poulicard Nils (collab.), Roche Benjamin (collab.), et al. (2017). Ecologie de la santé : pour une nouvelle lecture de nos maux.
Paris ; Paris : Le Cherche Midi ; CNRS, 191 p. ISBN 978-2-7491-5425-1.
Identifiant IRD :
fdi:010071853
Chapitres ou parties d'ouvrages
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Kochko Alexandre de, Hamon Serge, Guyot Romain, Couturon Emmanuel, Poncet Valérie, Dubreuil Tranchant Christine, Crouzillat D., Rigoreau M., Hamon Perla. (2017). Omics applications : Coffee. In :
Chowdappa P. (ed.), Karun A. (ed.), Rajesh M.K. (ed.), Ramesh S.V. (ed.). Biotechnology of plantation crops. New Delhi : Daya Publishing House, p. 589-606. ISBN 9789386071729.
Identifiant IRD :
fdi:010069162
2016
Articles référencés dans le Web of Science
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Adler S., Mouille G., Fock-Bastide I., Citerne S., Noirot Michel. (2016). Comparison between Coffea arabica L. 'Laurina' and C. arabica 'Bourbon' seedlings grown in daylight or darkness for their polysaccharidic cell wall composition and caffeine and chlorogenic acid contents. Trees : Structure and Function, 30 (3), p. 665-674. ISSN 0931-1890.
Identifiant IRD :
fdi:010066945
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Afolabi O., Amoussa R., Bile M., Oludare A., Gbogbo V., Poulin Lucie, Koebnik Ralf, Szurek Boris, Silue D. (2016). First report of bacterial leaf blight of rice caused by Xanthomonas oryzae pv. oryzae in Benin. Plant Disease, 100 (2), p. 515-515. ISSN 0191-2917.
Identifiant IRD :
PAR00014296
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Ali N., Tavoillot Johannes, Chapuis Elodie, Mateille Thierry. (2016). Trend to explain the distribution of root-knot nematodes Meloidogyne spp. associated with olive trees in Morocco. Agriculture Ecosystems and Environment, 225, p. 22-32. ISSN 0167-8809.
Identifiant IRD :
fdi:010066951
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Auguy Florence, Fahr M., Moulin Esmard Patricia, El Mzibri M., Smouni A., Filali-Maltouf A., Béna Gilles, Doumas P. (2016). Transcriptome changes in Hirschfeldia incana in response to lead exposure. Frontiers in Plant Science, 6, p. art. 1231 [13 p.]. ISSN 1664-462X.
Identifiant IRD :
fdi:010066103
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Barak J. D., Vancheva T., Lefeuvre P., Jones J. B., Timilsina S., Minsavage G. V., Vallad G. E., Koebnik Ralf. (2016). Whole-genome sequences of Xanthomonas euvesicatoria strains clarify taxonomy and reveal a stepwise erosion of type 3 effectors. Frontiers in Plant Science, 7, p. art. 1805 [12 p.]. ISSN 1664-462X.
Identifiant IRD :
fdi:010068740
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Bontemps C., Rogel M. A., Wiechmann A., Mussabekova A., Moody S., Simon M. F., Moulin Lionel, Elliott G. N., Lacercat-Didier L., Dasilva C., Grether R., Camargo-Ricalde S. L., Chen W. M., Sprent J. I., Martinez-Romero E., Young J. P. W., James E. K. (2016). Endemic Mimosa species from Mexico prefer alphaproteobacterial rhizobial symbionts. New Phytologist, 209 (1), p. 319-333. ISSN 0028-646X.
Identifiant IRD :
fdi:010066038
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Breitler J. C., Campa Claudine, Georget F., Bertrand B., Etienne H. (2016). A single-step method for RNA isolation from tropical crops in the field. Scientific Reports - Nature, 6, p. art. 38368 [6 p.]. ISSN 2045-2322.
Identifiant IRD :
fdi:010068775
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Cabasan M. T. N., Bellafiore Stéphane, Kumar A., De Waele D. (2016). The effect of temperature on resistance in african rice (oryza glaberrima steud.) genotypes to the rice root-knot nematode meloidogyne graminicola. Nematropica, 46 (2), p. 221-228. ISSN 0099-5444.
Identifiant IRD :
fdi:010069471
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Chapuis Elodie, Besnard G., Andrianasetra S., Rakotomalala M., Hieu Trang Nguyen, Bellafiore Stéphane. (2016). First report of the root-knot nematode (Meloidogyne graminicola) in Madagascar rice fields. Australasian Plant Disease Notes, 11 (1), 32 [4 p.]. ISSN 1833-928X.
Identifiant IRD :
fdi:010080348
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Cunnac Sébastien, Gantet P., Ghesquière Alain, Guiderdoni E., Doan Trung Luu. (2016). Le riz, une plante modèle à croquer !. In :
Les top-modèles végétaux : ce que les plantes nous apprennent du vivant. Biofutur, (380), p. 30-34. ISSN 0294-3506.
Identifiant IRD :
fdi:010067382
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Dall'Agnol R. F., Plotegher F., Souza R. C., Mendes I. C., dos Reis F. B., Béna Gilles, Moulin Lionel, Hungria M. (2016). Paraburkholderia nodosa is the main N-2-fixing species trapped by promiscuous common bean (Phaseolus vulgaris L.) in the Brazilian 'Cerradao'. Fems Microbiology Ecology, 92 (8), p. fiw108 [14 p.]. ISSN 0168-6496.
Identifiant IRD :
fdi:010068156
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Djedatin Gustave, Ndjiondjop M. N., Sanni A., Lorieux Mathias, Verdier Valérie, Ghesquière Alain. (2016). Identification of novel major and minor QTLs associated with Xanthomonas oryzae pv. oryzae (African strains) resistance in rice (Oryza sativa L.). Rice, 9, 1-10. ISSN 1939-8425.
Identifiant IRD :
fdi:010066900
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Fernandez Diana, de Sa M. G., Mezzalira I., Beneventi M., de Sa M. L., Amora D., Baimey H., Petitot A., Engler J. D., Albuquerque E. S. (2016). Functional analysis of root-knot nematode (Meloidogyne javanica) virulence genes in rice. Phytopathology, 106 (12), p. 153-153. APS Annual Meeting, Tampa (USA), 2016/07/31-2016/08/03. ISSN 0031-949X.
Identifiant IRD :
fdi:010068835
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Galzi Agnès, Dubreuil Tranchant Christine, Hébrard Eugénie, Mariac Cédric, Ghesquière Alain, Albar Laurence. (2016). Mutations in Rice yellow mottle virus polyprotein P2a involved in RYMV2 gene resistance breakdown. Frontiers in Plant Science, 7, 1779 [11 p.]. ISSN 1664-462X.
Identifiant IRD :
fdi:010068716
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Garavito A., Montagnon C., Guyot Romain, Bertrand B. (2016). Identification by the DArTseq method of the genetic origin of the Coffea canephora cultivated in Vietnam and Mexico. BMC Plant Biology, 16, 242 [12 p.]. ISSN 1471-2229.
Identifiant IRD :
fdi:010068327
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Grau J., Reschke M., Erkes A., Streubel J., Morgan R. D., Wilson G. G., Koebnik Ralf, Boch J. (2016). AnnoTALE : bioinformatics tools for identification, annotation, and nomenclature of TALEs from Xanthomonas genomic sequences. Scientific Reports - Nature, 6, p. art. 21077 [12 p.]. ISSN 2045-2322.
Identifiant IRD :
fdi:010066222
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Guentas L., Gensous S., Cavaloc Y., Ducousso M, Hamir A., Georges de Ledenon B. de, Moulin Lionel, Jourand Philippe. (2016). Burkholderia novacaledonica sp. nov. and B. ultramafica sp. nov. isolated from roots of Costularia spp. pioneer plants of ultramaficsoils in New Caledonia [Plus corrigenda]. Systematic and Applied Microbiology, 39 (3), p. 151-159 [+ corrigenda vol.30, no 5, p. 359 et 2019, vol. 42, p. 422]. ISSN 0723-2020.
Identifiant IRD :
fdi:010065744
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Guignon V., Hueber Y., Rouard M., Bocs S., Couvin D., De Lamotte F., Droc G., Dufayard J.F., El Hassouni N., Farcy C., Gkanogiannis A., Hamelin C., Larivière D., Martin G., Ortega E., Pitollat B., Pointet S., Ruiz M., Sarah G., Summo M., This D., Ravel S., Larmande Pierre, Monat C., Sabot François, Tando Ndomassi, Dubreuil Tranchant Christine, Sempere G., Dereeper Alexis. (2016). The South Green portal : a comprehensive resource for tropical and Mediterranean crop genomics. In :
Naithani S. (ed.), Van de Peer Y. (ed.). Genomic resources and databases. Current Plant Biology, 7-8, 6-9. ISSN 2214-6628.
Identifiant IRD :
fdi:010080164
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Guyot Romain, Darre T., Dupeyron M., Kochko Alexandre de, Hamon Serge, Couturon Emmanuel, Crouzillat D., Rigoreau M., Rakotomalala J. J., Raharimalala N. E., Akaffou S. D., Hamon Perla. (2016). Partial sequencing reveals the transposable element composition of Coffea genomes and provides evidence for distinct evolutionary stories. Molecular Genetics and Genomics, 291 (5), p. 1979-1990. ISSN 1617-4615.
Identifiant IRD :
fdi:010068137
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Huerta A., Delorean E., Bossa-Castro A., Raghavan C., Corral R., Verdier Valérie, Leung H., Leach J. (2016). Quantitative resistance loci identified for the bacterial blight causative agent, Xanthomonas oryzae pv. oryzae. Phytopathology, 106 (12), p. 81-81. APS Annual Meeting, Tampa (USA), 2016/07/31-2016/08/03. ISSN 0031-949X.
Identifiant IRD :
fdi:010068832
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Hutin M., Cesari S., Chalvon V., Michel C., Tran T. T., Boch J., Koebnik Ralf, Szurek Boris, Kroj T. (2016). Ectopic activation of the rice NLR heteropair RGA4/RGA5 confers resistance to bacterial blight and bacterial leaf streak diseases. Plant Journal, 88 (1), p. 43-55. ISSN 0960-7412.
Identifiant IRD :
fdi:010068698
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Jacques M. A., Arlat M., Boulanger A., Boureau T., Carrere S., Cesbron S., Chen N. W. G., Cociancich S., Darrasse A., Denance N., Fischer-Le Saux M., Gagnevin L., Koebnik Ralf, Lauber E., Noel L. D., Pieretti I., Portier P., Pruvost O., Rieux A., Robene I., Royer M., Szurek Boris, Verdier Valérie, Vernière C. (2016). Using ecology, physiology, and genomics to understand host specificity in Xanthomonas. Annual Review of Phytopathology, 54, p. 163-187.
Identifiant IRD :
fdi:010068769
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Janicke T., Chapuis Elodie. (2016). Condition dependence of male and female reproductive success : insights from a simultaneous hermaphrodite. Ecology and Evolution, 6 (3), 830-841. ISSN 2045-7758.
Identifiant IRD :
fdi:010066203
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Johnson J. M., Houngnandan P., Kane A., Chatagnier O., Sanon K. B., Neyra Marc, van Tuinen D. (2016). Colonization and molecular diversity of arbuscular mycorrhizal fungi associated with the rhizosphere of cowpea (Vigna unguiculata (L.) Walp.) in Benin (West Africa) : an exploratory study. Annals of Microbiology, 66 (1), p. 207-221. ISSN 1590-4261.
Identifiant IRD :
fdi:010066247
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Lang J., Koebnik Ralf, Perez-Quintero A., DuCharme E., Szurek Boris, Leach J., Verdier Valérie. (2016). Two complete genome sequences of a new pathovar of Xanthomonas oryzae infecting wild grasses provide insight into evolution of pathogenicity. Phytopathology, 106 (12), p. 147-147. APS Annual Meeting, Tampa (USA), 2016/07/31-2016/08/03. ISSN 0031-949X.
Identifiant IRD :
fdi:010068834
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Lashermes Philippe, Hueber Yann, Combes Marie-Christine, Severac D., Dereeper Alexis. (2016). Inter-genomic DNA exchanges and homeologous gene silencing shaped the nascent allopolyploid coffee genome (Coffea arabica L.). G3 : Genes Genomes Genetics, 6 (9), p. 2937-2948. ISSN 2160-1836.
Identifiant IRD :
fdi:010068256
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Lorenzo M. E., Grille G., Basso C., Bonato Olivier. (2016). Host preferences and biotic potential of Trialeurodes vaporariorum and Bemisia tabaci (Hemiptera : Aleyrodidae) in tomato and pepper. Arthropod-Plant Interactions, 10 (4), p. 293-301. ISSN 1872-8855.
Identifiant IRD :
fdi:010067705
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Ming R., Wai C. M., Guyot Romain. (2016). Pineapple genome : a reference for monocots and CAM photosynthesis. Trends in Genetics, 32 (11), p. 690-696. ISSN 0168-9525.
Identifiant IRD :
fdi:010068676
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Nicolas S. D., Peros J. P., Lacombe T., Launay A., Le Paslier M. C., Berard A., Mangin B., Valiere S., Martins F., Le Cunff L., Laucou V., Bacilieri R., Dereeper Alexis, Chatelet P., This P., Doligez A. (2016). Genetic diversity, linkage disequilibrium and power of a large grapevine (Vitis vinifera L.) diversity panel newly designed for association studies. BMC Plant Biology, 16, p. art. 74 [19 p.]. ISSN 1471-2229.
Identifiant IRD :
fdi:010066693
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Noirot Michel, Charrier A., Stoffelen P., Anthony François. (2016). Reproductive isolation, gene flow and speciation in the former Coffea subgenus : a review. Trees : Structure and Function, 30 (3), p. 597-608. ISSN 0931-1890.
Identifiant IRD :
fdi:010066944
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Petitot Anne-Sophie, Dereeper Alexis, Agbessi M., Da Silva C., Guy J., Ardisson M., Fernandez Diana. (2016). Dual RNA-seq reveals Meloidogyne graminicola transcriptome and candidate effectors during the interaction with rice plants. Molecular Plant Pathology, 17 (6), p. 860-874. ISSN 1464-6722.
Identifiant IRD :
fdi:010067694
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Quibod I. L., Perez-Quintero A., Booher N. J., Dossa G. S., Grande G., Szurek Boris, Cruz C. V., Bogdanove A. J., Oliva R. (2016). Effector diversification contributes to Xanthomonas oryzae pv. oryzae phenotypic adaptation in a semi-isolated environment. Scientific Reports - Nature, 6, p. art. 34137 [11 p.]. ISSN 2045-2322.
Identifiant IRD :
fdi:010068146
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Rache Cardenal L., Flores C., Lopez C., Szurek Boris, Vernier C., Koebnik Ralf, Restrepo S., Bernal A. (2016). A strategy to study population variation of Xanthomonas axonopodis pv. manihotis using a new set of multiple-locus variable number tandem repeats. Phytopathology, 106 (12), p. 137-137. APS Annual Meeting, Tampa (USA), 2016/07/31-2016/08/03. ISSN 0031-949X.
Identifiant IRD :
fdi:010068833
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Rocha D. M., Marques A., Andrade Cgtj, Guyot Romain, Chaluvadi S. R., Pedrosa-Harand A., Houben A., Bennetzen J. L., Vanzela A. L. L. (2016). Developmental programmed cell death during asymmetric microsporogenesis in holocentric species of Rhynchospora (Cyperaceae). Journal of Experimental Botany, 67 (18), p. 5391-5401. ISSN 0022-0957.
Identifiant IRD :
fdi:010068282
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Roncal J., Guyot Romain, Hamon Perla, Crouzillat D., Rigoreau M., Konan O. N., Rakotomalala J. J., Nowak M. D., Davis A. P., Kochko Alexandre de. (2016). Active transposable elements recover species boundaries and geographic structure in Madagascan coffee species. Molecular Genetics and Genomics, 291 (1), p. 155-168. ISSN 1617-4615.
Identifiant IRD :
fdi:010066167
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Roy L., Bon M. C., Cesarini C., Serin J., Bonato Olivier. (2016). Pinpointing the level of isolation between two cryptic species sharing the same microhabitat : a case study with a scarabaeid species complex. Zoologica Scripta, 45 (4), p. 407-420. ISSN 0300-3256.
Identifiant IRD :
fdi:010067637
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Sakrouhi I., Belfquih M., Sbabou L., Moulin Esmard Patricia, Béna Gilles, Filali-Maltouf A., Le Quéré Antoine. (2016). Recovery of symbiotic nitrogen fixing acacia rhizobia from Merzouga Desert sand dunes in South East Morocco : identification of a probable new species of Ensifer adapted to stressed environments. Systematic and Applied Microbiology, 39 (2), p. 122-131. ISSN 0723-2020.
Identifiant IRD :
fdi:010066783
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Sbabou L., Regragui A., Filali-Maltouf A., Ater M., Béna Gilles. (2016). Local genetic structure and worldwide phylogenetic position of symbiotic Rhizobium leguminosarum strains associated with a traditional cultivated crop, Vicia ervilia, from Northern Morocco. Systematic and Applied Microbiology, 39 (6), p. 409-417. ISSN 0723-2020.
Identifiant IRD :
fdi:010068144
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Sempéré G., Philippe Florian, Dereeper Alexis, Ruiz M., Sarah G., Larmande Pierre. (2016). Gigwa - Genotype investigator for genome-wide analyses [+ erratum]. Gigascience, 5, art. 25 [9 p.+ erratum : vol. 5, art. no 48]. ISSN 2047-217X.
Identifiant IRD :
fdi:010066961
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Tollenaere Charlotte, Susi H., Laine A. L. (2016). Evolutionary and epidemiological implications of multiple infection in plants. Trends in Plant Science, 21 (1), p. 80-90. ISSN 1360-1385.
Identifiant IRD :
fdi:010066171
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Triplett L. R., Cohen S. P., Heffelfinger C., Schmidt C. L., Huerta A. I., Tekete C., Verdier Valérie, Bogdanove A. J., Leach J. E. (2016). A resistance locus in the American heirloom rice variety Carolina Gold Select is triggered by TAL effectors with diverse predicted targets and is effective against African strains of Xanthomonas oryzae pv. oryzicola. Plant Journal, 87 (5), p. 472-483. ISSN 0960-7412.
Identifiant IRD :
fdi:010068751
Articles
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Etienne H., Bertrand B., Dechamp E., Maurel P., Georget F., Guyot Romain, Breitler J.C. (2016). Are genetic and epigenetic instabilities of plant embryogenic cells a fatality ? : the experience of coffee somatic embryogenesis. Human Genetics and Embryology, 6 (1), 5 p. ISSN 2161-0436.
Identifiant IRD :
fdi:010084065
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Sbabou L., Idir Y., Bruneel Odile, Le Quéré Antoine, Aurag J., Béna Gilles, Filali-Maltouf A. (2016). Characterization of root-nodule bacteria isolated from Hedysarum spinosissimum L, growing in mining sites of Northeastern region of Morocco. SOJ Microbiology and Infectious Diseases, 4 (3), 8 p. [en ligne]. ISSN 2372-0956.
Identifiant IRD :
fdi:010069861
Ouvrages
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Couturon Emmanuel, Raharimalala N.E., Rakotomalala J.J., Hamon Serge, Kochko Alexandre de, Guyot Romain, Hamon Perla. (2016). Caféiers sauvages : un trésor en péril au coeur des forêts tropicales ! = Wild coffee-trees : a threatened treasure in the heart of tropical forests !.
Montpellier : Association Biodiversité, Ecovalorisation et Caféiers, 117 p. ISBN 978-2-7466-9109-4.
Identifiant IRD :
fdi:010067198
2015
Articles référencés dans le Web of Science
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Adler S., Noirot Michel, Fock-Bastide I., Citerne S., Mouille G. (2015). Variations in cell wall monosaccharide composition during seed development in Coffea arabica L. : Comparison between Coffea arabica var. Bourbon and Coffea arabica var. Laurina. Trees-Structure and Function, 29 (6), p. 1871-1881. ISSN 0931-1890.
Identifiant IRD :
fdi:010065665
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Adler S., Verdeil J. L., Conejero G., Zaharia I. L., Sarrazin A., Hoareau J., Fock-Bastide I., Noirot Michel. (2015). Impact of the laurina mutation in Coffea arabica L. on semi-dwarfism, cell number and hormonal profiles in hypocotyls of seedlings growing under daylight. Trees-Structure and Function, 29 (4), p. 1197-1205. ISSN 0931-1890.
Identifiant IRD :
fdi:010064762
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Albuquerque E. V. S., Bezerra C. A., Romero J. V., Valencia J. W. A., Valencia-Jimenez A., Pimenta L. M., Barbosa Aead, Silva M. C. M., Meneguim A. M., Sa M. E. L., Engler G., de Almeida-Engler J., Fernandez Diana, Grossi-de-Sa M. F. (2015). Seed-specific stable expression of the alpha-AI1 inhibitor in coffee grains and the in vivo implications for the development of the coffee berry borer. Tropical Plant Biology, 8 (3-4), p. 98-107. ISSN 1935-9756.
Identifiant IRD :
fdi:010066022
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Ali N., Tavoillot Johannes, Mateille Thierry, Chapuis Elodie, Besnard G., El Bakkali A., Cantalapiedra-Navarrete C., Liebanas G., Castillo P., Palomares-Rius J. E. (2015). A new root-knot nematode Meloidogyne spartelensis n. sp. (Nematoda : Meloidogynidae) in Northern Morocco. European Journal of Plant Pathology, 143 (1), p. 25-42. ISSN 0929-1873.
Identifiant IRD :
fdi:010064896
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Bellafiore Stéphane, Jougla C., Chapuis Elodie, Besnard G., Suong M., Vu P. N., De Waele D., Gantet Pascal, Thi X. N. (2015). Intraspecific variability of the facultative meiotic parthenogenetic root-knot nematode (Meloidogyne graminicola) from rice fields in Vietnam. Comptes Rendus Biologies, 338 (7), p. 471-483. ISSN 1631-0691.
Identifiant IRD :
fdi:010064807
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Bertrand B., Bardil A., Baraille H., Dussert Stéphane, Doulbeau Sylvie, Dubois E., Severac D., Dereeper Alexis, Etienne H. (2015). The greater phenotypic homeostasis of the allopolyploid Coffea arabica improved the transcriptional homeostasis over that of both diploid parents. Plant and Cell Physiology, 56 (10), p. 2035-2051. ISSN 0032-0781.
Identifiant IRD :
fdi:010065464
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Beulé T., Agbessi M. D. T., Dussert Stéphane, Jaligot E., Guyot Romain. (2015). Genome-wide analysis of LTR-retrotransposons in oil palm. Bmc Genomics, 16, 795. ISSN 1471-2164.
Identifiant IRD :
fdi:010065385
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Chaparro C., Gayraud T., Souza R.F. de, Domingues D.S., Akaffou S., Laforga Vanzela A.L., Kochko Alexandre de, Rigoreau M., Crouzillat D., Hamon Serge, Hamon Perla, Guyot Romain. (2015). Terminal-repeat retrotransposons with GAG domain in plant genomes : a new testimony on the complex world of transposable elements. Genome Biology and Evolution, 7 (2), p. 493-504. ISSN 1759-6653.
Identifiant IRD :
fdi:010063587
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Clavijo F., Diedhiou I., Vaissayre Virginie, Brottier L., Acolatse J., Moukouanga Daniel, Crabos Amandine, Auguy Florence, Franche Claudine, Gherbi Hassen, Champion Antony, Hocher Valérie, Barker D., Bogusz Didier, Tisa L. S., Svistoonoff Sergio. (2015). The Casuarina NIN gene is transcriptionally activated throughout Frankia root infection as well as in response to bacterial diffusible signals. New Phytologist, 208 (3), p. 887-903. ISSN 0028-646X.
Identifiant IRD :
fdi:010065498
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Combes Marie-Christine, Hueber Yann, Dereeper Alexis, Rialle S., Herrera J. C., Lashermes Philippe. (2015). Regulatory divergence between parental alleles determines gene expression patterns in hybrids. Genome Biology and Evolution, 7 (4), p. 1110-1121. ISSN 1759-6653.
Identifiant IRD :
fdi:010064653
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Coudert Y., Le V. A. T., Adam Hélène, Bes M., Vignols Florence, Jouannic Stefan, Guiderdoni E., Gantet Pascal. (2015). Identification of CROWN ROOTLESS1-regulated genes in rice reveals specific and conserved elements of postembryonic root formation. New Phytologist, 206 (1), p. 243-254. ISSN 0028-646X.
Identifiant IRD :
fdi:010064013
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Czernic P., Gully Djamel, Cartieaux Fabienne, Moulin Lionel, Guefrachi I., Patrel Delphine, Pierre O., Fardoux Joël, Chaintreuil Clémence, Nguyen P., Gressent F., Da Silva C., Poulain J., Wincker P., Rofidal V., Hem S., Barrière Q., Arrighi Jean-François, Mergaert P., Giraud Eric. (2015). Convergent evolution of endosymbiont differentiation in dalbergioid and inverted repeat-lacking clade legumes mediated by nodule-specific cysteine-rich peptides. Plant Physiology, 169 (2), p. 1254-1265. ISSN 0032-0889.
Identifiant IRD :
fdi:010065536
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Dereeper Alexis, Bocs S., Rouard M., Guignon V., Ravel Sébastien, Dubreuil Tranchant Christine, Poncet Valérie, Garsmeur O., Lashermes Philippe, Droc G. (2015). The coffee genome hub : a resource for coffee genomes. Nucleic Acids Research, 43 (D1), D1028-D1035. ISSN 0305-1048.
Identifiant IRD :
fdi:010064052
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Dereeper Alexis, Homa F., Andres G., Sempere G., Sarah G., Hueber Yann, Dufayard J. F., Ruiz M. (2015). SNiPlay3 : a web-based application for exploration and large scale analyses of genomic variations. Nucleic Acids Research, 43 (W1), p. W295-W300. ISSN 0305-1048.
Identifiant IRD :
fdi:010064929
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Diouf F., Diouf D., Klonowska Agnieszka, Le Quéré Antoine, Bakhoum N., Fall D., Neyra Marc, Parrinello H., Diouf M., Ndoye I., Moulin Lionel. (2015). Genetic and genomic diversity studies of acacia symbionts in Senegal reveal new species of Mesorhizobium with a putative geographical pattern. Plos One, 10 (2), p. e0117667 [20 p.]. ISSN 1932-6203.
Identifiant IRD :
fdi:010063951
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Fernandez Diana, Petitot Anne-Sophie, Grossi de Sá M., Vũ Phong Nguyên, Almeida Engler J. de, Kyndt T. (2015). Recent advances in understanding plant : nematode interactions in monocots. In :
Escobar C. (ed.), Fenoll C. (ed.). Plant nematode interactions : a view on compatible interrelationships. Amsterdam : Academic Press, p. 189-219. (Advances in Botanical Research ; 73). ISBN 978-0-12-417161-9. ISSN 0065-2296.
Identifiant IRD :
fdi:010066333
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Galzi Agnès, Traore O., Sere Y., Hébrard Eugénie, Fargette Denis. (2015). The biogeography of viral emergence : rice yellow mottle virus as a case study. Current Opinion in Virology, 10, p. 7-13. ISSN 1879-6257.
Identifiant IRD :
fdi:010064089
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Graham S., Chapuis Elodie, Meconcelli S., Bonel N., Sartori K., Christophe A., Alda P., David P., Janicke T. (2015). Size-assortative mating in simultaneous hermaphrodites : an experimental test and a meta-analysis. Behavioral Ecology and Sociobiology, 69 (11), p. 1867-1878. ISSN 0340-5443.
Identifiant IRD :
fdi:010065340
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Hamza M. A., Ferji Z., Ali N., Tavoillot Johannes, Chapuis Elodie, El Oualkadi A., Moukhli A., Khadari B., Boubaker H., Lakhtar H., Roussos Sevastianos, Mateille Thierry, El Mousadik A. (2015). Plant-parasitic nematodes associated with olive tree in Southern Morocco. International Journal of Agriculture and Biology, 17 (4), p. 719-726. ISSN 1560-8530.
Identifiant IRD :
fdi:010064826
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Hutin M., Perez-Quintero A. L., Lopez C., Szurek Boris. (2015). MorTAL Kombat : the story of defense against TAL effectors through loss-of-susceptibility [plus corrigendum]. Frontiers in Plant Science, 6, art. 535 [12 p.] + corrigendum art. 647 [1 p.]. ISSN 1664-462X.
Identifiant IRD :
fdi:010064872
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Hutin Mathilde, Sabot François, Ghesquière Alain, Koebnik Ralf, Szurek Boris. (2015). A knowledge-based molecular screen uncovers a broad-spectrum OsSWEET14 resistance allele to bacterial blight from wild rice. Plant Journal, 84 (4), 694-703. ISSN 0960-7412.
Identifiant IRD :
fdi:010066114
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Jacobs J. M., Pesce C., Lefeuvre P., Koebnik Ralf. (2015). Comparative genomics of a cannabis pathogen reveals insight into the evolution of pathogenicity in Xanthomonas. Frontiers in Plant Science, 6, p. art. 431 [13 p.]. ISSN 1664-462X.
Identifiant IRD :
fdi:010064773
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Jalloul A., Sayegh M., Champion Antony, Nicole Michel. (2015). Bacterial blight of cotton. Phytopathologia Mediterranea, 54 (1), p. 3-20. ISSN 0031-9465.
Identifiant IRD :
fdi:010064151
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Janicke T., David P., Chapuis Elodie. (2015). Environment-dependent sexual selection : Bateman's parameters under varying levels of food availability. American Naturalist, 185 (6), p. 756-768. ISSN 0003-0147.
Identifiant IRD :
fdi:010064229
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Khong G. N., Pati P. K., Richaud F., Parizot B., Bidzinski P., Mai C. D., Bes M., Bourrie I., Meynard D., Beeckman T., Selvaraj M. G., Manabu I., Genga A. M., Brugidou Christophe, Do V. N., Guiderdoni E., Morel J. B., Gantet Pascal. (2015). OsMADS26 negatively regulates resistance to pathogens and drought tolerance in rice. Plant Physiology, 169 (4), p. 2935-2949. ISSN 0032-0889.
Identifiant IRD :
fdi:010066136
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Kone D., Dao S., Tekete C., Doumbia I., Koita O., Abo K., Wicker E., Verdier Valérie. (2015). Confirmation of Xanthomonas axonopodis pv. manihotis causing Cassava Bacterial Blight in Ivory Coast. Plant Disease, 99 (10), p. 1445-1445. ISSN 0191-2917.
Identifiant IRD :
fdi:010077596
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Landey R. B., Cenci Alberto, Guyot Romain, Bertrand B., Georget F., Dechamp E., Herrera J. C., Aribi Jamel, Lashermes Philippe, Etienne H. (2015). Assessment of genetic and epigenetic changes during cell culture ageing and relations with somaclonal variation in Coffea arabica. Plant Cell Tissue and Organ Culture, 122 (3), p. 517-531. ISSN 0167-6857.
Identifiant IRD :
fdi:010064917
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Lima E. A., Furlanetto C., Nicole Michel, Gomes A. C. M. M., Almeida M. R. A., Jorge A., Correa V. R., Salgado S. M., Ferrao M. A. G., Carneiro R. M. D. G. (2015). The multi-resistant reaction of drought-tolerant coffee 'Conilon Clone 14' to Meloidogyne spp. and late hypersensitive-like response in Coffea canephora. Phytopathology, 105 (6), p. 805-814. ISSN 0031-949X.
Identifiant IRD :
fdi:010064755
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Ming R., VanBuren R., Wai C. M., Tang H. B., Schatz M. C., Bowers J. E., Lyons E., Wang M. L., Chen J., Biggers E., Zhang J. S., Huang L. X., Zhang L. M., Miao W. J., Zhang J., Ye Z. Y., Miao C. Y., Lin Z. C., Wang H., Zhou H. Y., Yim W. C., Priest H. D., Zheng C. F., Woodhouse M., Edger P. P., Guyot Romain, Guo H. B., Guo H., Zheng G. Y., Singh R., Sharma A., Min X. J., Zheng Y., Lee H., Gurtowski J., Sedlazeck F. J., Harkess A., McKain M. R., Liao Z. Y., Fang J. P., Liu J., Zhang X. D., Zhang Q., Hu W. C., Qin Y., Wang K., Chen L. Y., Shirley N., Lin Y. R., Liu L. Y., Hernandez A. G., Wright C. L., Bulone V., Tuskan G. A., Heath K., Zee F., Moore P. H., Sunkar R., Leebens-Mack J. H., Mockler T., Bennetzen J. L., Freeling M., Sankoff D., Paterson A. H., Zhu X. G., Yang X. H., Smith J. A. C., Cushman J. C., Paull R. E., Yu Q. Y. (2015). The pineapple genome and the evolution of CAM photosynthesis. Nature Genetics, 47 (12), p. 1435-1442 + 3 p. d'annexes : online methods. ISSN 1061-4036.
Identifiant IRD :
fdi:010065534
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Ndikumana I., Galzi Agnès, Mzengeza T., Msolla S. N., Njau P., Choi I. R., Murori R., Bigirimana J., Fargette Denis, Hébrard Eugénie. (2015). First report of Rice yellow mottle virus in Rice in Malawi. Plant Disease, 99 (6), p. 899. ISSN 0191-2917.
Identifiant IRD :
fdi:010065945
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Nguyen T. D., Lacombe Séverine, Bangratz Martine, Ta H. A., Vinh D. N., Gantet Pascal, Brugidou Christophe. (2015). P2 of Rice grassy stunt virus (RGSV) and p6 and p9 of Rice ragged stunt virus (RRSV) isolates from Vietnam exert suppressor activity on the RNA silencing pathway. Virus Genes, 51 (2), p. 267-275. ISSN 0920-8569.
Identifiant IRD :
fdi:010065308
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Ochola D., Issaka S. L., Rakotomalala M., Galzi Agnès, Ndikumana I., Hubert J., Hébrard Eugénie, Sere Y., Tusiime G., Fargette Denis. (2015). Emergence of rice yellow mottle virus in eastern Uganda : recent and singular interplay between strains in East Africa and in Madagascar. Virus Research, 195, p. 64-72. ISSN 0168-1702.
Identifiant IRD :
fdi:010063722
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Oludare B. A., Sow M., Afolabi O., Galzi Agnès, Hébrard Eugénie, Silue D. (2015). First report of Rice stripe necrosis virus infecting rice in Benin. Plant Disease, 99 (5), p. 735. ISSN 0191-2917.
Identifiant IRD :
fdi:010065946
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Perez-Quintero Alvaro, Lamy L., Gordon J. L., Escalon A., Cunnac Sébastien, Szurek Boris, Gagnevin L. (2015). QueTAL : a suite of tools to classify and compare TAL effectors functionally and phylogenetically. Frontiers in Plant Science, 6, p. art. 545 [16 p.]. ISSN 1664-462X.
Identifiant IRD :
fdi:010064926
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Poulin Lucie, Grygiel P., Magne M., Gagnevin L., Rodriguez L. M., Serna N. F., Zhao S., El Rafii M., Dao S., Tekete C., Wonni I., Koita O., Pruvost O., Verdier Valérie, Vernière C., Koebnik Ralf. (2015). New multilocus variable-number tandem-repeat analysis tool for surveillance and local epidemiology of bacterial leaf blight and bacterial leaf streak of rice caused by Xanthomonas oryzae. Applied and Environmental Microbiology, 81 (2), p. 688-698. ISSN 0099-2240.
Identifiant IRD :
fdi:010063668
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Roux B., Bolot S., Guy E., Denancé N., Lautier M., Jardinaud M. F., Fischer-Le Saux M., Portier P., Jacques M. A., Gagnevin L., Pruvost O., Lauber E., Arlat M., Carrère S., Koebnik Ralf, Noël L. D. (2015). Genomics and transcriptomics of Xanthomonas campestris species challenge the concept of core type III effectome. BMC Genomics, 16, 975 [19 p.]. ISSN 1471-2164.
Identifiant IRD :
fdi:010065487
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Santos F. C., Guyot Romain, do Valle C. B., Chiari L., Techio V. H., Heslop-Harrison P., Vanzela A. L. L. (2015). Chromosomal distribution and evolution of abundant retrotransposons in plants : gypsy elements in diploid and polyploid Brachiaria forage grasses. Chromosome Research, 23 (3), p. 571-582. ISSN 0967-3849.
Identifiant IRD :
fdi:010065489
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Sicard A., Zeddam Jean-Louis, Yvon M., Michalakis Y., Gutierrez S., Blanc S. (2015). Circulative nonpropagative aphid transmission of nanoviruses : an oversimplified view. Journal of Virology, 89 (19), p. 9719-9726. ISSN 0022-538X.
Identifiant IRD :
fdi:010065256
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Silva Dias Elaine, Hatt Clémence, Hamon Perla, Hamon Serge, Rigoreau M., Crouzillat D., Carareto C.M.A., Kochko Alexandre de, Guyot Romain. (2015). Large distribution and high sequence identity of a Copia‑type retrotransposon in angiosperm families. Plant Molecular Biology, 89 (1-2), p. 83-97. ISSN 0167-4412.
Identifiant IRD :
fdi:010064998
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Tran T. T., Nga N. V., Ngan P. T., Hong N. T., Szurek Boris, Koebnik Ralf, Ham L. H., Cuong H. V., Cunnac Sébastien. (2015). Confirmation of bacterial leaf streak of rice caused by Xanthomonas oryzae pv. oryzicola in Vietnam. Plant Disease, 99 (12), p. 1853. ISSN 0191-2917.
Identifiant IRD :
PAR00014080
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Triplett L. R., Verdier Valérie, Campillo T., Van Malderghem C., Cleenwerck I., Maes M., Deblais L., Corral R., Koita O., Cottyn B., Leach J. E. (2015). Characterization of a novel clade of Xanthomonas isolated from rice leaves in Mali and proposal of Xanthomonas maliensis sp. nov.. Antonie Van Leeuwenhoek International Journal of General and Molecular Microbiology, 107 (4), p. 869-881. ISSN 0003-6072.
Identifiant IRD :
fdi:010064023
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VanBuren R., Zeng F. C., Chen C. X., Zhang J. S., Wai C. M., Han J., Aryal R., Gschwend A. R., Wang J. P., Na J. K., Huang L. X., Zhang L. M., Miao W. J., Gou J. Q., Arro J., Guyot Romain, Moore R. C., Wang M. L., Zee F., Charlesworth D., Moore P. H., Yu Q. Y., Ming R. (2015). Origin and domestication of papaya Y-h chromosome. Genome Research, 25 (4), p. 524-533. ISSN 1088-9051.
Identifiant IRD :
fdi:010064149
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VanchevaT., Bogatzevska N., Moncheva P., Lefeuvre P., Koebnik Ralf. (2015). Draft genome sequences of two Xanthomonas vesicatoria strains from the Balkan peninsula. Genome Announcements, 3 (1), e01558-14 [2 p.]. ISSN 2576-098X.
Identifiant IRD :
fdi:010084027
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Wonni I., Ouedraogo L., Dao S., Tekete C., Koita O., Taghouti G., Portier P., Szurek Boris, Verdier Valérie. (2015). First report of Cassava Bacterial Blight caused by Xanthomonas axonopodis pv. manihotis in Burkina Faso. Plant Disease, 99 (4), p. 551-551. ISSN 0191-2917.
Identifiant IRD :
fdi:010067157
Articles
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Pesce C., Bolot S., Cunnac Sébastien, Portier P., Fischer-Le Saux M., Jacques M.J., Gagenvin L., Arlat M., Noël L.D., Carrère S., Bragard C., Koebnik Ralf. (2015). High-quality draft genome sequence of the Xanthomonas translucens pv. cerealis pathotype strain CFBP 2541. Genome Announcements, 3 (1), art. no e01574-14 [2 p.]. ISSN 2169-8287.
Identifiant IRD :
fdi:010072985
Chapitres ou parties d'ouvrages
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Hamon Perla, Hamon Serge, Razafinarivo Norosoa J., Guyot Romain, Siljak-Yakovlev S., Couturon Emmanuel, Crouzillat D., Rigoreau M., Akaffou S., Rakotomalala J.J., Kochko Alexandre de. (2015). Coffea genome organization and evolution. In :
Preedy V. (ed.). Coffee in health and disease prevention. San Diego : Academic Press, p. 29-37. ISBN 978-0-12-409517-5.
Identifiant IRD :
fdi:010063204
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Hamon Perla, Rakotomalala J.J., Akaffou S., Razafinarivo Norosoa J., Couturon Emmanuel, Guyot Romain, Crouzillat D., Hamon Serge, Kochko Alexandre de. (2015). Caffeine-free species in the genus Coffea. In :
Preedy V. (ed.). Coffee in health and disease prevention. San Diego : Academic Press, p. 39-44. ISBN 978-0-12-409517-5.
Identifiant IRD :
fdi:010063205
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Moulin Lionel, James E.K., Klonowska Agnieszka, Miana de Faria S., Simon M.F. (2015). Phylogeny, diversity, geographical distribution, and host range of legume-nodulating betaproteobacteria : what Is the role of plant taxonomy ?. In :
De Bruijn F.J (ed.). Biological nitrogen fixation. Chichester : J. Wiley, p. 177-190. ISBN 978-1-119-05309-5.
Identifiant IRD :
fdi:010070132
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Mueller L., Strickler S., Domingues D., Pereira L., Andrade A., Marraccini P., Ming R., Wai J., Albert V., Giuliano G., Fiore A., Pietrella M., Aprea G., Descombes P., Moine D., Guyot Romain, Poncet Valérie, Hamon Perla, Hamon Serge, Dubreuil Tranchant Christine, Couturon Emmanuel, Kochko Alexandre de, Lepelley M., Bellanger L., Merot-L'Anthoene V., Vandecasteele C., Rigoreau M., Crouzillat D., Paschoal Rossi A., Sankoff D., Zheng C., Kuhn G., Korlach J., Chin J. (2015). Towards a better understanding of the Coffea arabica genome structure. In :
Proceedings of the 25th international conference on coffee science. ASIC, p 42-45. International Conference on Coffe Science, 25., Armenia (COL), 2015/09/08-13. ISBN 978-2-900212-24-0.
Identifiant IRD :
fdi:010065067
2014
Articles référencés dans le Web of Science
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Adler S., Verdeil J. L., Lartaud M., Fock-Bastide I., Joët Thierry, Conejero G., Noirot Michel. (2014). Morphological and histological impacts of the laurina mutation on fructification and seed characteristics in Coffea arabica L.. Trees : Structure and Function, 28 (2), p. 585-595. ISSN 0931-1890.
Identifiant IRD :
fdi:010061873
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Afolabi O., Milan B., Amoussa R., Koebnik Ralf, Poulin Lucie, Szurek Boris, Habarugira G., Bigirimana J., Silue D. (2014). First Report of Xanthomonas oryzae pv. oryzicola causing bacterial leaf streak of rice in Burundi. Plant Disease, 98 (10), p. 1426-1426. ISSN 0191-2917.
Identifiant IRD :
PAR00012297
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Afolabi O., Milan B., Poulin Lucie, Ongom J., Szurek Boris, Koebnik Ralf, Silue D. (2014). First Report of Xanthomonas oryzae pv. oryzicola causing bacterial leaf streak of rice in Uganda. Plant Disease, 98 (11), p. 1579-1579. ISSN 0191-2917.
Identifiant IRD :
PAR00012371
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Ali N., Chapuis Elodie, Tavoillot Johannes, Hamza M. A., El Mousadik A., El Oulkadi A., Besnard G., El Bakkali A., Moukhli A., Khadari B., El Modafar C., Ater M., Mateille Thierry. (2014). Plant parasitic nematodes communities associated with olive trees in Morocco. Journal of Nematology, 46 (2), p. 133. International Congress of Nematology, 6., Le Cap (SFA), 2014/05. ISSN 0022-300X.
Identifiant IRD :
fdi:010063102
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Ali N., Chapuis Elodie, Tavoillot Johannes, Mateille Thierry. (2014). Plant-parasitic nematodes associated with olive tree (Olea europaea L.) with a focus on the Mediterranean Basin : a review. Comptes Rendus Biologies, 337 (7-8), 423-442. ISSN 1631-0691.
Identifiant IRD :
fdi:010062517
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Aribaud M., Noirot Michel, Fock-Bastide I., Vaniet S., Kodja H. (2014). Comparison between Solanum torvum Sw. and S. melongena L. after Ralstonia solanacearum inoculation. Plant Biology, 16 (5), p. 1025-1028. ISSN 1435-8603.
Identifiant IRD :
fdi:010062496
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Ash G.J., Lang J.M., Triplett L.R., Stodart B.J., Verdier Valérie, Cruz C.V., Rott P., Leach J. E. (2014). Development of a genomics-based LAMP (Loop-Mediated Isothermal Amplification) assay for detection of Pseudomonas fuscovaginae from rice. Plant Disease, 98 (7), p. 909-915. ISSN 0191-2917.
Identifiant IRD :
fdi:010062381
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Bahar O., Pruitt R., Luu D. D., Schwessinger B., Daudi A., Liu F., Ruan R., Fontaine-Bodin L., Koebnik Ralf, Ronald P. (2014). The Xanthomonas Ax21 protein is processed by the general secretory system and is secreted in association with outer membrane vesicles. Peerj, 2, p. e242 [14 p.]. ISSN 2167-8359.
Identifiant IRD :
fdi:010064619
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Besnard G., Juhling F., Chapuis Elodie, Zedane L., Lhuillier E., Mateille Thierry, Bellafiore Stéphane. (2014). Fast assembly of the mitochondrial genome of a plant parasitic nematode (Meloidogyne graminicola) using next generation sequencing. Comptes Rendus Biologies, 337 (5), p. 295-301. ISSN 1631-0691.
Identifiant IRD :
fdi:010062237
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Brouat Carine, Tollenaere Charlotte, Estoup A., Loiseau A., Sommer S., Soanandrasana R., Rahalison L., Rajerison M., Piry S., Goodman S. M., Duplantier Jean-Marc. (2014). Invasion genetics of a human commensal rodent : the black rat Rattus rattus in Madagascar. Molecular Ecology, 23 (16), p. 4153-4167. ISSN 0962-1083.
Identifiant IRD :
fdi:010062470
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Cabasan M. T. N., Kumar A., Bellafiore Stéphane, De Waele D. (2014). Histopathology of the rice root-knot nematode, Meloidogyne graminicola, on Oryza sativa and O. glaberrima. Nematology, 16 (1), p. 73-81. ISSN 1388-5545.
Identifiant IRD :
fdi:010061721
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Chen J., Fernandez Diana, Wang D. D., Chen Y. J., Dai G. H. (2014). Biological control mechanisms of D-pinitol against powdery mildew in cucumber. Physiological and Molecular Plant Pathology, 88, p. 52-60. ISSN 0885-5765.
Identifiant IRD :
fdi:010063125
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Conejero G., Noirot Michel, Talamond Pascale, Verdeil J. L. (2014). Spectral analysis combined with advanced linear unmixing allows for histolocalization of phenolics in leaves of coffee trees. Frontiers in Plant Science, 5, 39 [7 p. en ligne]. ISSN 1664-462X.
Identifiant IRD :
fdi:010061777
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Denance N., Szurek Boris, Noel L. D. (2014). Emerging functions of nodulin-like proteins in non-nodulating plant species. Plant and Cell Physiology, 55 (3), p. 469-474. ISSN 0032-0781.
Identifiant IRD :
PAR00011599
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Denoeud F., Carretero-Paulet L., Dereeper Alexis, Droc G., Guyot Romain, Pietrella M., Zheng C. F., Alberti A., Anthony François, Aprea G., Aury J. M., Bento P., Bernard M., Bocs S., Campa Claudine, Cenci Alberto, Combes Marie-Christine, Crouzillat D., Da Silva C., Daddiego L., De Bellis F., Dussert Stéphane, Garsmeur O., Gayraud T., Guignon V., Jahn K., Jamilloux V., Joët Thierry, Labadie K., Lan T. Y., Leclercq J., Lepelley M., Leroy T., Li L. T., Librado P., Lopez L., Munoz A., Noel B., Pallavicini A., Perrotta G., Poncet Valérie, Pot D., Priyono, Rigoreau M., Rouard M., Rozas J., Dubreuil Tranchant Christine, Van Buren R., Zhang Q., Andrade A. C., Argout X., Bertrand B., Kochko Alexandre de, Graziosi G., Henry R. J., Jayarama, Ming R., Nagai C., Rounsley S., Sankoff D., Giuliano G., Albert V. A., Wincker P., Lashermes Philippe. (2014). The coffee genome provides insight into the convergent evolution of caffeine biosynthesis. Science, 345 (6201), 1181-1184. ISSN 0036-8075.
Identifiant IRD :
fdi:010062514
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Fock-Bastide I., Palama T. L., Bory S., Lecolier A., Noirot Michel, Joët Thierry. (2014). Expression profiles of key phenylpropanoid genes during Vanilla planifolia pod development reveal a positive correlation between PAL gene expression and vanillin biosynthesis. Plant Physiology and Biochemistry, 74, p. 304-314. ISSN 0981-9428.
Identifiant IRD :
fdi:010061811
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Freitas V. M., Correa V. R., Motta F. C., Sousa M. G., Gomes Acmm, Carneiro M. D. G., Silva D. B., Mattos J. K., Nicole Michel, Carneiro Rmdg. (2014). Resistant accessions of wild Psidium spp. to Meloidogyne enterolobii and histological characterization of resistance. Plant Pathology, 63 (4), p. 738-746. ISSN 0032-0862.
Identifiant IRD :
fdi:010062498
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Janicke T., Vellnow N., Lamy T., Chapuis Elodie, David P. (2014). Inbreeding depression of mating behavior and its reproductive consequences in a freshwater snail. Behavioral Ecology, 25 (2), 288-299. ISSN 1045-2249.
Identifiant IRD :
fdi:010062282
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Joët Thierry, Laffargue Andréina, Salmona J., Doulbeau Sylvie, Descroix F., Bertrand B., Lashermes Philippe, Dussert Stéphane. (2014). Regulation of galactomannan biosynthesis in coffee seeds. Journal of Experimental Botany, 65 (1), p. 323-337. ISSN 0022-0957.
Identifiant IRD :
fdi:010061496
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Jousimo J., Tack A.J.M., Ovaskainen O., Mononen T., Susi H., Tollenaere Charlotte, Laine A.L. (2014). Ecological and evolutionary effects of fragmentation on infectious disease dynamics. Science, 344 (6189), 1289-1293. ISSN 0036-8075.
Identifiant IRD :
fdi:010080770
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Kyndt T., Fernandez Diana, Gheysen G. (2014). Plant-parasitic nematode infections in rice : molecular and cellular insights. Annual Review of Phytopathology, 52, p. 135-153. ISSN 0066-4286.
Identifiant IRD :
fdi:010063932
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Lang J. M., Langlois P., Nguyen M. H. R., Triplett L. R., Purdie L., Holton T. A., Djikeng A., Cruz C. M. V., Verdier Valérie, Leach J. E. (2014). Sensitive detection of Xanthomonas oryzae pathovars oryzae and oryzicola by Loop-Mediated Isothermal Amplification. Applied and Environmental Microbiology, 80 (15), p. 4519-4530. ISSN 0099-2240.
Identifiant IRD :
fdi:010062326
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Lashermes Philippe, Combes Marie-Christine, Hueber Yann, Severac D., Dereeper Alexis. (2014). Genome rearrangements derived from homoeologous recombination following allopolyploidy speciation in coffee. Plant Journal, 78 (4), p. 674-685. ISSN 0960-7412.
Identifiant IRD :
fdi:010062061
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Longue D. R. S., Galzi Agnès, Semballa S., Zinga I., Fargette Denis, Traoré O. (2014). First report of Rice yellow mottle virus in rice in the Central African Republic. Plant Disease, 98 (1), p. 162-162. ISSN 0191-2917.
Identifiant IRD :
PAR00011262
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Machin A., Telleria Jenny, Brizard Jean-Paul, Demettre E., Seveno M., Ayala F. J., Tibayrenc Michel. (2014). Trypanosoma cruzi : gene expression surveyed by proteomic analysis reveals interaction between different genotypes in mixed in vitro cultures. Plos One, 9 (4), p. e95442. ISSN 1932-6203.
Identifiant IRD :
fdi:010061997
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Mensi I., Vernerey M. S., Gargani D., Nicole Michel, Rott P. (2014). Breaking dogmas : the plant vascular pathogen Xanthomonas albilineans is able to invade non-vascular tissues despite its reduced genome. Open Biology, 4, art. 130116 [13 p.]. ISSN 2046-2441.
Identifiant IRD :
fdi:010061830
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Munoz-Bodnar A., Perez-Quintero A., Gomez-Cano F., Gil J., Michelmore R., Bernal A., Szurek Boris, Lopez C. (2014). RNAseq analysis of cassava reveals similar plant responses upon infection with pathogenic and non-pathogenic strains of Xanthomonas axonopodis pv. manihotis. Plant Cell Reports, 33 (11), p. 1901-1912. ISSN 0721-7714.
Identifiant IRD :
fdi:010062658
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Nguyen P. V., Bellafiore Stéphane, Petitot Anne-Sophie, Haidar R., Bak A., Abed A., Gantet Pascal, Mezzalira I., Engler J. D., Fernandez Diana. (2014). Meloidogyne incognita - rice (Oryza sativa) interaction : a new model system to study plant-root-knot nematode interactions in monocotyledons. Rice, 7, 23 [13 p.]. ISSN 1939-8425.
Identifiant IRD :
fdi:010062580
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Poulicard N., Galzi Agnès, Fargette Denis, Hébrard Eugénie. (2014). Alternative mutational pathways, outside the VPg, of rice yellow mottle virus to overcome eIF(iso)4G-mediated rice resistance under strong genetic constraints. Journal of General Virology, 95 (1), p. 219-224. ISSN 0022-1317.
Identifiant IRD :
fdi:010062393
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Poulin Lucie, Raveloson H., Sester M., Raboin L. M., Silue D., Koebnik Ralf, Szurek Boris. (2014). Confirmation of bacterial leaf streak caused by Xanthomonas oryzae pv. oryzicola on rice in Madagascar. Plant Disease, 98 (10), p. 1423-1423. ISSN 0191-2917.
Identifiant IRD :
PAR00012298
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Pruvost O., Magne M., Boyer K., Leduc A., Tourterel C., Drevet C., Ravigné V., Gagnevin L., Guérin F., Chiroleu F., Koebnik Ralf, Verdier Valérie, Vernière C. (2014). A MLVA genotyping scheme for global surveillance of the Citrus pathogen Xanthomonas citri pv. citri suggests a worldwide geographical expansion of a single genetic lineage. Plos One, 9 (6), e98129. ISSN 1932-6203.
Identifiant IRD :
fdi:010062370
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Rakotomalala M. R., Abera B., Galzi Agnès, Rakotoarisoa J., Alemu D., Fargette Denis. (2014). First report of rice yellow mottle virus in rice in Federal Democratic Republic of Ethiopia. Plant Disease, 98 (10), p. 1449-1450. ISSN 0191-2917.
Identifiant IRD :
PAR00012294
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Richter A., Streubel J., Blucher C., Szurek Boris, Reschke M., Grau J., Boch J. (2014). A TAL effector repeat architecture for frameshift binding. Nature Communications, 5, p. art. 3447. ISSN 2041-1723.
Identifiant IRD :
fdi:010061956
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Robin G. P., Ortiz E., Szurek Boris, Brizard Jean-Paul, Koebnik Ralf. (2014). Comparative proteomics reveal new HrpX-regulated proteins of Xanthomonas oryzae pv. oryzae. Journal of Proteomics, 97, p. 256-264. ISSN 1874-3919.
Identifiant IRD :
fdi:010064610
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Romero G., Vasquez L. M., Lashermes Philippe, Herrera J. C. (2014). Identification of a major QTL for adult plant resistance to coffee leaf rust (Hemileia vastatrix) in the natural Timor hybrid (Coffea arabica x C. canephora). Plant Breeding, 133 (1), p. 121-129. ISSN 0179-9541.
Identifiant IRD :
fdi:010061747
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Scott S. W., MacFarlane S. A., McGavin W. J., Fargette Denis. (2014). Cassava Ivorian bacilliform virus is a member of the genus Anulavirus. Archives of Virology, 159 (10), p. 2791-2793. ISSN 0304-8608.
Identifiant IRD :
fdi:010062583
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Sérémé D., Lacombe Séverine, Konaté M., Bangratz Martine, Galzi Agnès, Fargette Denis, Traoré A. S., Konaté G., Brugidou Christophe. (2014). Sites under positive selection modulate the RNA silencing suppressor activity of rice yellow mottle virus movement protein P1. Journal of General Virology, 95 (1), p. 213-218. ISSN 0022-1317.
Identifiant IRD :
fdi:010062392
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Sereme D., Neya B. J., Bangratz Martine, Brugidou Christophe, Ouedraogo I. (2014). First report of rice stripe necrosis virus infecting rice in Burkina Faso. Plant Disease, 98 (10), p. 1451-1451. ISSN 0191-2917.
Identifiant IRD :
PAR00012293
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Soubeyrand S., Tollenaere Charlotte, Haon-Lasportes E., Laine A.L. (2014). Regression-based ranking of pathogen strains with respect to their contribution to natural epidemics. Plos One, 9 (1), e86591 [8 p.]. ISSN 1932-6203.
Identifiant IRD :
fdi:010080771
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Talhinhas P., Azinheira H. G., Vieira B., Loureiro A., Tavares S., Batista D., Morin E., Petitot Anne-Sophie, Paulo O. S., Poulain J., Da Silva C., Duplessis S., Silva M. D., Fernandez Diana. (2014). Overview of the functional virulent genome of the coffee leaf rust pathogen Hemileia vastatrix with an emphasis on early stages of infection. Frontiers in Plant Science, 5, art. 88 [17 p.]. ISSN 1664-462X.
Identifiant IRD :
fdi:010061842
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Tollenaere Charlotte, Pernechele B., Mäkinen H.S., Parratt S.R., Németh M.Z., Kovács G.M., Kiss L., Tack A.J.M., Laine A.L. (2014). A hyperparasite affects the population dynamics of a wild plant pathogen. Molecular Ecology, 23 (23), 5877–5887. ISSN 0962-1083.
Identifiant IRD :
fdi:010080768
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Triplett L., Verdier Valérie, Alexander M., Cohen S., Craven J., Bogdanove A., Leach J. (2014). A novel rice resistance phenotype to Xanthomonas oryzae TAL effectors does not require the effector transcriptional activation domain. Phytopathology, 104 (11), p. 120-120. ISSN 0031-949X.
Identifiant IRD :
fdi:010077597
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Trujillo C. A., Arias-Rojas N., Poulin Lucie, Medina C. A., Tapiero A., Restrepo S., Koebnik Ralf, Bernal A. J. (2014). Population typing of the causal agent of cassava bacterial blight in the Eastern Plains of Colombia using two types of molecular markers. Bmc Microbiology, 14, p. art. 161. ISSN 1471-2180.
Identifiant IRD :
fdi:010062315
-
Wonni I., Cottyn B., Detemmerman L., Dao S., Ouedraogo L., Sarra S., Tekete C., Poussier S., Corral R., Triplett L., Koita O., Koebnik Ralf, Leach J., Szurek Boris, Maes M., Verdier Valérie. (2014). Analysis of Xanthomonas oryzae pv. oryzicola population in Mali and Burkina Faso reveals a high level of genetic and pathogenic diversity. Phytopathology, 104 (5), p. 520-531. ISSN 0031-949X.
Identifiant IRD :
fdi:010061940
2013
Articles référencés dans le Web of Science
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Arrieta-Ortiz M. L., Rodriguez L. M., Perez-Quintero A. L., Poulin Lucie, Diaz A. C., Arias Rojas N., Trujillo C., Restrepo Benavides M., Bart R., Boch J., Boureau T., Darrasse A., David P., Dugué de Bernonville T., Fontanilla P., Gagnevin L., Guérin F., Jacques M. A., Lauber E., Lefeuvre P., Medina C., Medina E., Montenegro N., Munoz Bodnar A., Noel L. D., Ortiz Quinones J. F., Osorio D., Pardo C., Patil P. B., Poussier S., Pruvost O., Robène-Soustrade I., Ryan R. P., Tabima J., Urrego Morales O. G., Vernière C., Carrere S., Verdier Valérie, Szurek Boris, Restrepo S., Lopez C., Koebnik Ralf, Bernal A. (2013). Genomic survey of pathogenicity determinants and VNTR markers in the cassava bacterial pathogen Xanthomonas axonopodis pv. manihotis strain cio151. Plos One, 8 (11), p. e79704. ISSN 1932-6203.
Identifiant IRD :
fdi:010061347
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Ash G. J., Lang J. M., Triplett L. R., Stodart B. J., Verdier Valérie, Leach J. E. (2013). Loop-mediated isothermal amplification for the detection of Pseudomonas fuscovaginae. Phytopathology, 103 (6 suppl. 2), p. 10-10. ISSN 0031-949X.
Identifiant IRD :
fdi:010060612
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Baufume Servane, Meynard D., Reschke M., Sole M., Cunnac Sébastien, Szurek Boris, Guiderdoni E., Boch J., Koebnik Ralf. (2013). New rice resistance genes via targeted genome editing. Phytopathology, 103 (6 suppl. 2), p. 13-13. ISSN 0031-949X.
Identifiant IRD :
fdi:010060613
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Boch J., Boureau T., Brin C., Cunnac Sébastien, David P., Feng J. X., Hajri A., Hutin M., Koebnik Ralf, Mo W. L., Pesce C., Poussier S., Streubel J., Szurek Boris, Tang J. L., Tang W., Tran T. T., Verdier Valérie, Wu F., Zhao S. (2013). Contribution of type III/TAL effectors to pathogenicity. Phytopathology, 103 (6 suppl. 2), p. 170-170. ISSN 0031-949X.
Identifiant IRD :
fdi:010060618
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Bodnar A. M., Bernal A., Szurek Boris, Lopez C. E. (2013). Tell me a tale of TALEs. Molecular Biotechnology, 53 (2), p. 228-235. ISSN 1073-6085.
Identifiant IRD :
fdi:010058243
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Bossa-Castro A. M., Raghavan C., Vera-Cruz C., Leung H., Mosquera G. M., Verdier Valérie, Leach J. E. (2013). Identifying novel bacterial disease resistance sources for rice. Phytopathology, 103 (6 suppl. 2), p. 19-19. ISSN 0031-949X.
Identifiant IRD :
fdi:010060614
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Carpio C., Dangles Olivier, Dupas Stéphane, Léry Xavier, Lopez-Ferber M., Orbe K., Paez D., Rebaudo François, Santillan A., Yangari B., Zeddam Jean-Louis. (2013). Development of a viral biopesticide for the control of the Guatemala potato tuber moth Tecia solanivora. Journal of Invertebrate Pathology, 112 (2), p. 184-191. ISSN 0022-2011.
Identifiant IRD :
fdi:010058973
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Castiblanco L. F., Gil J., Rojas A., Osorio D., Gutierrez S., Munoz-Bodnar A., Perez-Quintero A. L., Koebnik Ralf, Szurek Boris, Lopez C., Restrepo S., Verdier Valérie, Bernal A. J. (2013). TALE1 from Xanthomonas axonopodis pv. manihotis acts as a transcriptional activator in plant cells and is important for pathogenicity in cassava plants. Molecular Plant Pathology, 14 (1), p. 84-95. ISSN 1464-6722.
Identifiant IRD :
fdi:010058217
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Cenci Alberto, Combes Marie-Christine, Lashermes Philippe. (2013). Differences in evolution rates among eudicotyledon species observed by analysis of protein divergence. Journal of Heredity, 104 (4), p. 459-464. ISSN 0022-1503.
Identifiant IRD :
fdi:010060535
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Combes Marie-Christine, Dereeper Alexis, Severac D., Bertrand B., Lashermes Philippe. (2013). Contribution of subgenomes to the transcriptome and their intertwined regulation in the allopolyploid Coffea arabica grown at contrasted temperatures. New Phytologist, 200 (1), p. 251-260. ISSN 1469-8137.
Identifiant IRD :
fdi:010060579
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Cruz C. M. V., Nguyen M. H. R., Lang J. M., Burgos M. R. G., Cottyn B., Verdier Valérie, Mishra D., Raj Y., Leach J. E. (2013). Detection of Xanthomonas oryzae pathovars from rice seeds : an assay potentially viable for use in seed trade and germplasm exchange. Phytopathology, 103 (6 suppl. 2), p. 152-152. ISSN 0031-949X.
Identifiant IRD :
fdi:010060617
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Darrasse A., Carrere S., Barbe V., Boureau T., Arrieta-Ortiz M. L., Bonneau S., Briand M., Brin C., Cociancich S., Durand K., Fouteau S., Gagnevin L., Guerin F., Guy E., Indiana A., Koebnik Ralf, Lauber E., Munoz A., Noel L. D., Pieretti I., Poussier S., Pruvost O., Robene-Soustrade I., Rott P., Royer M., Serres-Giardi L., Szurek Boris, van Sluys M. A., Verdier Valérie, Verniere C., Arlat M., Manceau C., Jacques M. A. (2013). Genome sequence of Xanthomonas fuscans subsp fuscans strain 4834-R reveals that flagellar motility is not a general feature of xanthomonads. Bmc Genomics, 14, p. 761. ISSN 1471-2164.
Identifiant IRD :
fdi:010061373
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Dereeper Alexis, Guyot Romain, Dubreuil Tranchant Christine, Anthony François, Argout X., de Bellis F., Combes Marie-Christine, Gavory F., Kochko Alexandre de, Kudrna D., Leroy T., Poulain J., Rondeau M., Song X., Wing R., Lashermes Philippe. (2013). BAC-end sequences analysis provides first insights into coffee (Coffea canephora P.) genome composition and evolution. Plant Molecular Biology, 83 (3), p. 177-189. ISSN 0167-4412.
Identifiant IRD :
fdi:010061149
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Droc G., Lariviere D., Guignon V., Yahiaoui N., This D., Garsmeur O., Dereeper Alexis, Hamelin C., Argout X., Dufayard J. F., Lengelle J., Baurens F. C., Cenci Alberto, Pitollat B., D'Hont A., Ruiz M., Rouard M., Bocs S. (2013). The banana genome hub. Database : the Journal of Biological Databases and Curation, p. bat035. ISSN 1758-0463.
Identifiant IRD :
fdi:010060383
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Gagnevin L., Roux B., Bolot S., Carrere S., Charbit E., Cunnac Sébastien, Jacques M. A., Noel L. D., Arlat M., Koebnik Ralf. (2013). Genome and transcriptome analysis to reveal adaptation to new environments and hosts. Phytopathology, 103 (6 suppl. 2), p. 170-171. ISSN 0031-949X.
Identifiant IRD :
fdi:010060619
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Gillet F. X., Cattoni D. I., Petiot-Becard S., Delalande F., Poignavent V., Brizard Jean-Paul, Bessin Y., Van Dorsselaer A., Declerck N., Sanglier-Cianferani S., Brugidou Christophe, Vignols F. (2013). The RYMV-encoded viral suppressor of RNA silencing P1 is a zinc-binding protein with redox-dependent flexibility. Journal of Molecular Biology, 425 (14), p. 2423-2435. ISSN 0022-2836.
Identifiant IRD :
fdi:010060558
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Hubert J. G., Galzi Agnès, Dibwe D., Cinyabuguma E., Kaboré A., Fargette Denis, Silué D., Hébrard Eugénie, Séré Y. (2013). First report of Rice yellow mottle virus on rice in the Democratic Republic of Congo. Plant Disease, 97 (12), p. 1664. ISSN 0191-2917.
Identifiant IRD :
fdi:010065947
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Jeong K., Bodnar A. M., Poulin Lucie, Rojas N. A., Rodriguez L. M., Gagnevin L., Pruvost O., Koebnik Ralf. (2013). CRISPR systems in plant pathogens : a new tool for epidemiological surveillance. Phytopathology, 103 (6 suppl. 2), p. 67-68. ISSN 0031-949X.
Identifiant IRD :
fdi:010060615
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Landey R. B., Cenci Alberto, Georget F., Bertrand B., Camayo G., Dechamp E., Herrera J. C., Santoni S., Lashermes Philippe, Simpson J., Etienne H. (2013). High genetic and pigenetic stability in coffea arabica plants derived from embryogenic suspensions and secondary embryogenesis as revealed by AFLP, MSAP and the phenotypic variation rate. Plos One, 8 (2), p. e56372. ISSN 1932-6203.
Identifiant IRD :
fdi:010060770
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Lang J. M., Langlois P., Nguyen H., Cruz C. M. V., Purdie L., Holton T., Djikeng A., Verdier Valérie, Leach J. E. (2013). Detection of Xanthomonas oryzae by loop-mediated isothermal amplification. Phytopathology, 103 (6 suppl. 2), p. 76-76. ISSN 0031-949X.
Identifiant IRD :
fdi:010060616
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Mota F. C., Alves G. C. S., Giband M., Gomes A. C. M. M., Sousa F. R., Mattos V. S., Barbosa V. H. S., Barroso P. A. V., Nicole Michel, Peixoto J. R., Rocha M. R., Carneiro R. M. D. G. (2013). New sources of resistance to Meloidogyne incognita race 3 in wild cotton accessions and histological characterization of the defence mechanisms. Plant Pathology, 62 (5), p. 1173-1183. ISSN 0032-0862.
Identifiant IRD :
fdi:010060642
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Noel L. D., Denance N., Szurek Boris. (2013). Predicting promoters targeted by TAL effectors in plant genomes : from dream to reality. Frontiers in Plant Science, 4, 333 [4 p. en ligne]. ISSN 1664-462X.
Identifiant IRD :
fdi:010061749
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Perez-Quintero A. L., Rodriguez L. M., Dereeper Alexis, Lopez C., Koebnik Ralf, Szurek Boris, Cunnac Sébastien. (2013). An improved method for TAL effectors DNA-binding sites prediction reveals functional convergence in TAL repertoires of Xanthomonas oryzae strains. Plos One, 8 (7), p. e68464. ISSN 1932-6203.
Identifiant IRD :
fdi:010060556
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Petitot Anne-Sophie, Barsalobres-Cavallari C., Ramiro D., Freire E. A., Etienne H., Fernandez Diana. (2013). Promoter analysis of the WRKY transcription factors CaWRKY1a and CaWRKY1b homoeologous genes in coffee (Coffea arabica). Plant Cell Reports, 32 (8), p. 1263-1276. ISSN 0721-7714.
Identifiant IRD :
fdi:010060518
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Rakotomalala M., Galzi Agnès, Mpunami A., Randrianasolo A., Ramavovololona P., Rabenantoandro Y., Fargette Denis. (2013). Rice yellow mottle virus in Madagascar and in the Zanzibar Archipelago ; island systems and evolutionary time scale to study virus emergence. Virus Research, 171 (1), p. 71-79. ISSN 0168-1702.
Identifiant IRD :
fdi:010060719
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Riahi L., Ayari B., Zoghlami N., Dereeper Alexis, Laucou V., Mliki A., This P. (2013). High efficiency and informativeness of a set of SNP molecular markers in Tunisian local grapevines discrimination. Biochemical Systematics and Ecology, 51, p. 175-183. ISSN 0305-1978.
Identifiant IRD :
fdi:010061459
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Riahi L., Zoghlami N., Dereeper Alexis, Laucou V., Mliki A., This P. (2013). Single nucleotide polymorphism and haplotype diversity of the gene NAC4 in grapevine. Industrial Crops and Products, 43, p. 718-724. ISSN 0926-6690.
Identifiant IRD :
fdi:010058192
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Riahi L., Zoghlami N., Dereeper Alexis, Laucou V., Mliki A., This P. (2013). Molecular characterization and evolutionary pattern of the 9-cis-epoxycarotenoid dioxygenase NCED1 gene in grapevine. Molecular Breeding, 32 (2), p. 253-266. ISSN 1380-3743.
Identifiant IRD :
fdi:010060590
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Riahi L., Zoghlami N., Fournier-Level A., Dereeper Alexis, Le Cunff L., Laucou V., Mliki A., This P. (2013). Characterization of single nucleotide polymorphism in Tunisian grapevine genome and their potential for population genetics and evolutionary studies. Genetic Resources and Crop Evolution, 60 (3), p. 1139-1151. ISSN 0925-9864.
Identifiant IRD :
fdi:010060744
-
Royer M., Koebnik Ralf, Marguerettaz M., Barbe V., Robin G. P., Brin C., Carrere S., Gomez C., Hugelland M., Voller G. H., Noell J., Pieretti I., Rausch S., Verdier Valérie, Poussier S., Rott P., Sussmuth R. D., Cociancich S. (2013). Genome mining reveals the genus Xanthomonas to be a promising reservoir for new bioactive non-ribosomally synthesized peptides. Bmc Genomics, 14, p. 658. ISSN 1471-2164.
Identifiant IRD :
fdi:010061157
-
Streubel J., Pesce C., Hutin M., Koebnik Ralf, Boch J., Szurek Boris. (2013). Five phylogenetically close rice SWEET genes confer TAL effector-mediated susceptibility to Xanthomonas oryzae pv. oryzae. New Phytologist, 200 (3), p. 808-819. ISSN 1469-8137.
Identifiant IRD :
fdi:010061220
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Ta H. A., Nguyen D. P., Causse S., Nguyen T. D., Ngo V. V., Hébrard Eugénie. (2013). Molecular diversity of Rice grassy stunt virus in Vietnam. Virus Genes, 46 (2), p. 383-386. ISSN 0920-8569.
Identifiant IRD :
fdi:010060787
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Tollenaere Charlotte, Laine A.L. (2013). Investigating the production of sexual resting structures in a plant pathogen reveals unexpected self-fertility and genotype-by-environment effects. Journal of Evolutionary Biology, 26 (8), 1716-1726. ISSN 1010-061X.
Identifiant IRD :
fdi:010080769
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Villain L., Sarah J. L., Hernandez A., Bertrand B., Anthony François, Lashermes Philippe, Charmetant P., Anzueto F., Carneiro R. M. D. G. (2013). Diversity of root-knot nematodes parasitizing coffee in Central America. Nematropica, 43 (2), p. 194-206. ISSN 0099-5444.
Identifiant IRD :
fdi:010061825
-
Zeddam Jean-Louis, Léry Xavier, Gomez-Bonilla Y., Espinel-Correal C., Paez D., Rebaudo François, Lopez-Ferber M. (2013). Responses of different geographic populations of two potato tuber moth species to genetic variants of Phthorimaea operculella granulovirus. Entomologia Experimentalis et Applicata, 149 (2), p. 138-147. ISSN 0013-8703.
Identifiant IRD :
fdi:010061205
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Zhao Shuai, Mo W. L., Wu F., Tang W., Tang J. L., Szurek Boris, Verdier Valérie, Koebnik Ralf, Feng J. X. (2013). Identification of non-TAL effectors in Xanthomonas oryzae pv. oryzae Chinese strain 13751 and analysis of their role in the bacterial virulence. World Journal of Microbiology and Biotechnology, 29 (4), p. 733-744. ISSN 0959-3993.
Identifiant IRD :
fdi:010060753
Chapitres ou parties d'ouvrages
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Barsalobres-Cavallari C.F., Petitot Anne-Sophie, Severino F.E., Maia I.G., Fernandez Diana. (2013). Host response profiling to fungal infection: molecular cloning, characterization and expression analysis of NPR1 gene from coffee (Coffea arabica). In :
Mendez-Vilas A. (ed.). Microbial pathogens and strategies for combating them : science, technology and education. Badajoz : Formatex Research Center, p. 411-418. (Microbiology ; 4). ISBN 978-84-939843-9-7.
Identifiant IRD :
fdi:010066331
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Calatayud Paul-André, Garrec J.P., Nicole Michel. (2013). Adaptation des plantes aux stress environnementaux. In :
Sauvion N. (ed.), Calatayud Paul-André (ed.), Thiéry D. (ed.), Marion-Pol F. (ed.). Interactions insectes-plantes. Marseille ; Versailles : IRD ; Quae, p. 229-245. ISBN 978-2-7099-1746-9.
Identifiant IRD :
fdi:010060094
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Fernandez Diana, Talhinhas P., Duplessis S. (2013). Rust fungi : achievements and future challenges on genomics and hostparasite interactions. In :
Kempken F. (ed.). The Mycota : vol XI. Agricultural applications. Berlin : Springer, p. 315-341. ISBN 978-3-642-36820-2.
Identifiant IRD :
fdi:010060128
-
Vidal Claire, Gauthier Nathalie, Rochat D., Hérard F., Thiéry A., Vayssières J.F., Dupas S., Dangles Olivier, Silvain Jean-François, Torres-Leguizamon Magally, Zeddam Jean-Louis, Sforza R., Desneux N. (2013). Quelques exemples de bio-invasions dans le monde. In :
Sauvion N. (ed.), Calatayud Paul-André (ed.), Thiéry D. (ed.), Marion-Pol F. (ed.). Interactions insectes-plantes. Marseille ; Versailles : IRD ; Quae, 57-96. ISBN 978-2-7099-1746-9.
Identifiant IRD :
fdi:010060089
2012
Articles référencés dans le Web of Science
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Albrecht B., Scornavacca C., Cenci Alberto, Huson D. H. (2012). Fast computation of minimum hybridization networks. Bioinformatics, 28 (2), p. 191-197. ISSN 1367-4803.
Identifiant IRD :
PAR00008479
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Carrier G., Le Cunff L., Dereeper Alexis, Legrand D., Sabot François, Bouchez O., Audeguin L., Boursiquot J. M., This P. (2012). Transposable elements are a major cause of somatic polymorphism in Vitis vinifera L. Plos One, 7 (3), p. e32973. ISSN 1932-6203.
Identifiant IRD :
fdi:010055801
-
Cenci Alberto, Combes Marie-Christine, Lashermes Philippe. (2012). Genome evolution in diploid and tetraploid Coffea species as revealed by comparative analysis of orthologous genome segments. Plant Molecular Biology, 78 (1-2), p. 135-145. ISSN 0167-4412.
Identifiant IRD :
fdi:010054234
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Charrier A., Bertrand B., Lashermes Philippe. (2012). Des évolutions marquantes pour le café en ce début de XXIe siècle. Cahiers Agricultures, 21 (2-3), p. 73-76. ISSN 1166-7699.
Identifiant IRD :
fdi:010055994
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Combes Marie-Christine, Cenci Alberto, Baraille H., Bertrand B., Lashermes Philippe. (2012). Homeologous gene expression in response to growing temperature in a recent allopolyploid (Coffea arabica L.). Journal of Heredity, 103 (1), p. 36-46. ISSN 0022-1503.
Identifiant IRD :
fdi:010054310
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Diniz I., Talhinhas P., Azinheira H. G., Varzea V., Medeira C., Maia I., Petitot Anne-Sophie, Nicole Michel, Fernandez Diana, Do Ceu Silva M. (2012). Cellular and molecular analyses of coffee resistance to Hemileia vastatrix and nonhost resistance to Uromyces vignae in the resistance-donor genotype HDT832/2. European Journal of Plant Pathology, 133 (1), p. 141-157. ISSN 0929-1873.
Identifiant IRD :
fdi:010055823
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Duncan A. B., Agnew P., Noël V., Demettre E., Seveno M., Brizard Jean-Paul, Michalakis Y. (2012). Proteome of Aedes aegypti in response to infection and coinfection with microsporidian parasites. Ecology and Evolution, 2 (4), p. 681-694. ISSN 2045-7758.
Identifiant IRD :
fdi:010058236
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Espinel-Correal C., Lopez-Ferber M., Zeddam Jean-Louis, Villamizar L., Gomez J., Cotes A. M., Léry Xavier. (2012). Experimental mixtures of Phthorimaea operculella granulovirus isolates provide high biological efficacy on both Phthorimaea operculella and Tecia solanivora (Lepidoptera : Gelechiidae). Journal of Invertebrate Pathology, 110 (3), p. 375-381. ISSN 0022-2011.
Identifiant IRD :
fdi:010055987
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Fernandez Diana, Tisserant E., Talhinhas P., Azinheira H., Vieira A., Petitot Anne-Sophie, Loureiro A., Poulain J., Da Silva C., Silva M. D. C., Duplessis S. (2012). 454-pyrosequencing of Coffea arabica leaves infected by the rust fungus Hemileia vastatrix reveals in planta-expressed pathogen-secreted proteins and plant functions in a late compatible plant-rust interaction. Molecular Plant Pathology, 13 (1), p. 17-37. ISSN 1464-6722.
Identifiant IRD :
fdi:010054279
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Gomez-Bonilla Y., Lopez-Ferber M., Caballero P., Léry Xavier, Munoz D. (2012). Costa Rican soils contain highly insecticidal granulovirus strains against Phthorimaea operculella and Tecia solanivora. Journal of Applied Entomology, 136 (7), 530-538. ISSN 0931-2048.
Identifiant IRD :
fdi:010057019
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Hajri A., Brin C., Zhao S., David P., Feng J. X., Koebnik Ralf, Szurek Boris, Verdier Valérie, Boureau T., Poussier S. (2012). Multilocus sequence analysis and type III effector repertoire mining provide new insights into the evolutionary history and virulence of Xanthomonas oryzae. Molecular Plant Pathology, 13 (3), p. 288-302. ISSN 1464-6722.
Identifiant IRD :
fdi:010055658
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Jung M., Leye N., Vidal Nicole, Fargette Denis, Diop H., Kane C. T., Gascuel O., Peeters Martine. (2012). The origin and evolutionary history of HIV-1 subtype C in Senegal. Plos One, 7 (3), p. e33579. ISSN 1932-6203.
Identifiant IRD :
fdi:010055928
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Lacape J. M., Claverie M., Vidal R. O., Carazzolle M. F., Pereira G. A. G., Ruiz M., Pre M., Llewellyn D., Al-Ghazi Y., Jacobs J., Dereeper Alexis, Huguet S., Giband M., Lanaud C. (2012). Deep sequencing reveals differences in the transcriptional landscapes of fibers from two cultivated species of cotton. Plos One, 7 (11), p. e48855. ISSN 1932-6203.
Identifiant IRD :
fdi:010058172
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Lashermes Philippe, Combes Marie-Christine, Dereeper Alexis, Cenci Alberto. (2012). Diversité et évolution des caféiers à la lumière de la génomique. Cahiers Agricultures, 21 (2-3), p. 134-142. ISSN 1166-7699.
Identifiant IRD :
fdi:010055998
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Lindeberg M., Cunnac Sébastien, Collmer A. (2012). Pseudomonas syringae type III effector repertoires : last words in endless arguments. Trends in Microbiology, 20 (4), p. 199-208. ISSN 0966-842X.
Identifiant IRD :
fdi:010055844
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Loureiro A., Nicole Michel, Varzea V., Moncada P., Bertrand B., Silva M.C. (2012). Coffee resistance to Colletotrichum kahawae is associated with lignification, accumulation of phenols and cell death at infection sites. Physiological and Molecular Plant Pathology, 77 (1), p. 23-32. ISSN 0885-5765.
Identifiant IRD :
fdi:010054419
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Mansfield J., Genin S., Magori S., Citovsky V., Sriariyanum M., Ronald P., Dow M., Verdier Valérie, Beer S. V., Machado M. A., Toth I., Salmond G., Foster G. D. (2012). Top 10 plant pathogenic bacteria in molecular plant pathology. Molecular Plant Pathology, 13 (6), p. 614-629. ISSN 1464-6722.
Identifiant IRD :
fdi:010057016
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Ndikumana I., Galzi Agnès, Negussie Z., Msolla S. N., Njau P., Singh R. K., Choi I. R., Bigirimana J., Fargette Denis, Hébrard Eugénie. (2012). First report of Rice yellow mottle virus on rice in Burundi. Plant Disease, 96 (8), p. 1230. ISSN 0191-2917.
Identifiant IRD :
fdi:010065948
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Pieretti I., Royer M., Barbe V., Carrere S., Koebnik Ralf, Couloux A., Darrasse A., Gouzy J., Jacques M. A., Lauber E., Manceau C., Mangenot S., Poussier S., Segurens B., Szurek Boris, Verdier Valérie, Arlat M., Gabriel D. W., Rott P., Cociancich S. (2012). Genomic insights into strategies used by Xanthomonas albilineans with its reduced artillery to spread within sugarcane xylem vessels. Bmc Genomics, 13, p. 658. ISSN 1471-2164.
Identifiant IRD :
fdi:010058982
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Poulicard Nils, Galzi Agnès, Traore O., Vignols F., Ghesquière Alain, Konate G., Hébrard Eugénie, Fargette Denis. (2012). Historical contingencies modulate the adaptability of Rice Yellow Mottle Virus. Plos Pathogens, 8 (1), e1002482. ISSN 1553-7366.
Identifiant IRD :
fdi:010055667
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Quénéhervé Patrick, Godefroid Martin, Topart Patrick, Marie-Luce Serge, Salmon F., Marie P., Chabrier C. (2012). Differential responses to plant-feeding nematodes among sibling cultivars of dessert bananas (Cavendish subgroup) and a synthetic hybrid. Crop Protection, 42, p. 30-35. ISSN 0261-2194.
Identifiant IRD :
fdi:010058990
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Sanier C., Sayegh-Alhamdia M., Jalloul A., Clérivet Alain, Nicole Michel, Marmey Philippe. (2012). A 13-lipoxygenase is expressed early in the hypersensitive reaction of cotton plants to Xanthomonas campestris pv. malvacearum. Journal of Phytopathology, 160 (6), p. 286-293. ISSN 0931-1785.
Identifiant IRD :
fdi:010055883
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Verdier Valérie, Cruz C. V., Leach J. E. (2012). Controlling rice bacterial blight in Africa : needs and prospects. Journal of Biotechnology, 159 (4), p. 320-328. ISSN 0168-1656.
Identifiant IRD :
fdi:010055918
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Verdier Valérie, Triplett L. R., Hummel A. W., Corral R., Cernadas R. A., Schmidt C. L., Bogdanove A. J., Leach J. E. (2012). Transcription activator-like (TAL) effectors targeting OsSWEET genes enhance virulence on diverse rice (Oryza sativa) varieties when expressed individually in a TAL effector-deficient strain of Xanthomonas oryzae. New Phytologist, 196 (4), p. 1197-1207. ISSN 0028-646X.
Identifiant IRD :
fdi:010057326
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Vieira A., Talhinhas P., Loureiro A., Thurich J., Duplessis S., Fernandez Diana, Do Ceu Silva M., Paulo O. S., Azinheira H. G. (2012). Expression profiling of genes involved in the biotrophic colonisation of Coffea arabica leaves by Hemileia vastatrix. European Journal of Plant Pathology, 133 (1), p. 261-277. ISSN 0929-1873.
Identifiant IRD :
fdi:010055815
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Zhao S., Poulin Lucie, Rodriguez-R L.M., Serna N.F., Liu S. Y., Wonni I., Szurek Boris, Verdier Valérie, Leach J. E., He Y. Q., Feng J. X., Koebnik Ralf. (2012). Development of a variable number of tandem repeats typing scheme for the bacterial rice pathogen Xanthomonas oryzae pv. oryzicola. Phytopathology, 102 (10), p. 948-956. ISSN 0031-949X.
Identifiant IRD :
fdi:010077595
Articles
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Ta Hoang Anh, Nguyen Doan Phuong, Nguyen Van Chung, Tran Thi Thu Huyen, Pham Thi Luong, Hébrard Eugénie, Ngo Vinh Vien. (2012). New yellowing syndrome caused by rice transitory yellowing virus on rice in some areas of Mekong Delta. Journal of Vietnam Agricultural Science and Technology, 1 (1), p. 12-18. ISSN 1859-1558.
Identifiant IRD :
fdi:010065895
Chapitres ou parties d'ouvrages
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Chroboczek J., Hébrard Eugénie, Mäkiner K., Michon T., Rantalainen K. (2012). Intrinsic disorder in genome-linked viral proteins VPgs of potyviruses. In :
Uversky V.N. (ed.), Longhi S. (ed.). Flexible viruses : structural disorder in viral proteins. Hoboken : Wiley, p. 277-312. (Wiley Series on Protein and Peptide Science). ISBN 978-0-470-61831-8.
Identifiant IRD :
fdi:010057592
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Koebnik Ralf, Lindeberg M. (2012). Comparative genomics and evolution of bacterial type 3 effectors. In :
Martin F. (ed.), Kamoun S. (ed.). Effectors in plant-microbe interactions. Chichester : Wiley-Blackwell, p. 55-76. ISBN 978-0-4709-5822-3.
Identifiant IRD :
fdi:010056576
2011
Articles référencés dans le Web of Science
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Bardil A., Dantas de Almeida Juliana, Combes Marie-Christine, Lashermes Philippe, Bertrand B. (2011). Genomic expression dominance in the natural allopolyploid Coffea arabica is massively affected by growth temperature. New Phytologist, 192 (3), p. 760-774. ISSN 0028-646X.
Identifiant IRD :
fdi:010054178
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Black R., Fava F., Mattei N., Robert Vincent, Seal S., Verdier Valérie. (2011). Case studies on the use of biotechnologies and on biosafety provisions in four African countries. Journal of Biotechnology, 156 (4), p. 370-381. ISSN 0168-1656.
Identifiant IRD :
fdi:010054325
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Bogdanove A. J., Koebnik Ralf, Lu H., Furutani A., Angiuoli S. V., Patil P. B., Van Sluys M. A., Ryan R. P., Meyer D. F., Han S. W., Aparna G., Rajaram M., Delcher A. L., Phillippy A. M., Puiu D., Schatz M. C., Shumway M., Sommer D. D., Trapnell C., Benahmed F., Dimitrov G., Madupu R., Radune D., Sullivan S., Jha G., Ishihara H., Lee S. W., Pandey A., Sharma V., Sriariyanun M., Szurek Boris, Vera-Cruz C. M., Dorman K. S., Ronald P. C., Verdier Valérie, Dow J. M., Sonti R. V., Tsuge S., Brendel V. P., Rabinowicz P. D., Leach J. E., White F. F., Salzberg S. L. (2011). Two new complete genome sequences offer insight into host and tissue specificity of plant pathogenic Xanthomonas spp. Journal of Bacteriology, 193 (19), p. 5450-5464. ISSN 0021-9193.
Identifiant IRD :
fdi:010077677
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Cacas J. L., Petitot Anne-Sophie, Bernier L., Estevan J., Conejero G., Mongrand S., Fernandez Diana. (2011). Identification and characterization of the Non-race specific Disease Resistance 1 (NDR1) orthologous protein in coffee. Bmc Plant Biology, 11, p. 144. ISSN 1471-2229.
Identifiant IRD :
fdi:010054152
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Dereeper Alexis, Nicolas S., Le Cunff L., Bacilieri R., Doligez A., Peros J. P., Ruiz M., This P. (2011). SNiPlay : a web-based tool for detection, management and analysis of SNPs. Application to grapevine diversity projects. Bmc Bioinformatics, 12, p. 134. ISSN 1471-2105.
Identifiant IRD :
fdi:010053550
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Djedatin G., Ndjiondjop M. N., Mathieu Thierry, Cruz C. M. V., Sanni A., Ghesquière Alain, Verdier Valérie. (2011). Evaluation of African cultivated rice Oryza glaberrima for resistance to bacterial blight. Plant Disease, 95 (4), p. 441-447. ISSN 0191-2917.
Identifiant IRD :
fdi:010052677
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Dyer N. A., Ravel Sophie, Choi K. S., Darby A. C., Causse Sandrine, Kapitano B., Hall M. J. R., Steen K., Lutumba P., Madinga J., Torr S. J., Okedi L. M., Lehane M. J., Donnelly M. J. (2011). Cryptic diversity within the major trypanosomiasis vector Glossina fuscipes revealed by molecular markers. Plos Neglected Tropical Diseases, 5 (8), p. e1266. ISSN 1935-2727.
Identifiant IRD :
fdi:010053810
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Escobar J. S., Scornavacca C., Cenci Alberto, Guilhaumon C., Santoni S., Douzery E. J. P., Ranwez V., Glemin S., David J. (2011). Multigenic phylogeny and analysis of tree incongruences in Triticeae (Poaceae). Bmc Evolutionary Biology, 11, p. 181. ISSN 1471-2148.
Identifiant IRD :
fdi:010053717
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Figueiredo S. A., Lashermes Philippe, Aragao F. J. L. (2011). Molecular characterization and functional analysis of the beta-galactosidase gene during Coffea arabica (L.) fruit development. Journal of Experimental Botany, 62 (8), p. 2691-2703. ISSN 0022-0957.
Identifiant IRD :
PAR00007634
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Gomez-Bonilla Y., Lopez-Ferber M., Caballero P., Léry Xavier, Munoz D. (2011). Characterization of a Costa Rican granulovirus strain highly pathogenic against its indigenous hosts, Phthorimaea operculella and Tecia solanivora. Entomologia Experimentalis et Applicata, 140 (3), 238-246. ISSN 0013-8703.
Identifiant IRD :
fdi:010053740
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Hoang A. T., Zhang H. M., Yang J., Chen J. P., Hébrard Eugénie, Zhou G. H., Vien V. N., Cheng J. A. (2011). Identification, characterization, and distribution of southern rice black-streaked dwarf virus in Vietnam. Plant Disease, 95 (9), p. 1063-1069. ISSN 0191-2917.
Identifiant IRD :
fdi:010052730
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Lashermes Philippe, Combes Marie-Christine, Ansaldi Caroline, Gichuru Elijah, Noir Sandra. (2011). Analysis of alien introgression in coffee tree (Coffea arabica L.). Molecular Breeding, 27 (2), p. 223-232. ISSN 1380-3743.
Identifiant IRD :
fdi:010053123
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Mhedbi-Hajri N., Jacques M. A., Koebnik Ralf. (2011). Adhesion mechanisms of plant-pathogenic xanthomonadaceae. Bacterial Adhesion : Chemistry, Biology and Physics, 715, p. 71-89.
Identifiant IRD :
PAR00007631
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Nowak M. D., Davis A. P., Anthony François, Yoder A. D. (2011). Expression and trans-specific polymorphism of self-incompatibility RNases in Coffea (Rubiaceae). Plos One, 6 (6), p. e21019. ISSN 1932-6203.
Identifiant IRD :
fdi:010053636
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Olspert A., Peil L., Hébrard Eugénie, Fargette Denis, Truve E. (2011). Protein-RNA linkage and post-translational modifications of two sobemovirus VPgs. Journal of General Virology, 92 (Part 2), p. 445-452. ISSN 0022-1317.
Identifiant IRD :
fdi:010065013
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Potnis N., Krasileva K., Chow V., Almeida N. F., Patil P. B., Ryan R. P., Sharlach M., Behlau F., Dow J. M., Momol M. T., White F. F., Preston J. F., Vinatzer B. A., Koebnik Ralf, Setubal J. C., Norman D. J., Staskawicz B. J., Jones J. B. (2011). Comparative genomics reveals diversity among xanthomonads infecting tomato and pepper. Bmc Genomics, 12, p. 146. ISSN 1471-2164.
Identifiant IRD :
fdi:010053458
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Privat I., Bardil A., Gomez A.B., Severac D., Dantec C., Fuentes I., Mueller L., Joët Thierry, Pot D., Foucrier S., Dussert Stéphane, Leroy Thierry, Journot L., Kochko Alexandre de, Campa Claudine, Combes Marie-Christine, Lashermes Philippe, Bertrand Benoit. (2011). The 'PUCE CAFE' Project : the First 15K coffee microarray, a new tool for discovering candidate genes correlated to agronomic and quality traits. Bmc Genomics, 12, p. 5. ISSN 1471-2164.
Identifiant IRD :
fdi:010053088
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Quénéhervé Patrick, Barriere V., Salmon F., Houdin F., Achard R., Gertrude J. C., Marie-Luce S., Chabrier C., Duyck P. F., Tixier P. (2011). Effect of banana crop mixtures on the plant-feeding nematode community. Applied Soil Ecology, 49, p. 40-45. ISSN 0929-1393.
Identifiant IRD :
fdi:010054188
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Quénéhervé Patrick, Godefroid Martin, Mège P., Marie-Luce S. (2011). Diversity of meloidogyne spp. parasitizing plants in Martinique island, French West Indies. Nematropica, 41 (2), p. 191-199. ISSN 0099-5444.
Identifiant IRD :
fdi:010054418
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Ribas Alessandra, Cenci Alberto, Combes Marie-Christine, Etienne H., Lashermes Philippe. (2011). Organization and molecular evolution of a disease-resistance gene cluster in coffee trees. Bmc Genomics, 12, p. 240. ISSN 1471-2164.
Identifiant IRD :
fdi:010053620
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Ribas Alessandra, Dechamp E., Champion Antony, Bertrand B., Combes Marie-Christine, Verdeil J. L., Lapeyre F., Lashermes Philippe, Etienne H. (2011). Agrobacterium-mediated genetic transformation of Coffea arabica (L.) is greatly enhanced by using established embryogenic callus cultures. Bmc Plant Biology, 11, p. 92. ISSN 1471-2229.
Identifiant IRD :
fdi:010053607
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Soler A., Gaude J. M., Marie-Alphonsine P. A., Vinatier F., Dole B., Govindin J. C., Fournier P., Quénéhervé Patrick. (2011). Development and evaluation of a new method for sampling and monitoring the symphylid population in pineapple. Pest Management Science, 67 (9), p. 1169-1177. ISSN 1526-498X.
Identifiant IRD :
fdi:010053781
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Tanekou T. T., Melachio T. T., Simo G., Ravel Sophie, De Meeûs Thierry, Causse Sandrine, Solano Philippe, Lutumba P., Asonganyi T., Njiokou F. (2011). Population genetics of Glossina palpalis palpalis from central African sleeping sickness foci. Parasites and Vectors, 4, p. 140. ISSN 1756-3305.
Identifiant IRD :
fdi:010053806
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Torres-Leguizamon Magallita, Dupas Stéphane, Dardon D., Gomez Y., Nino L., Carnero A., Padilla A., Merlin I., Fossoud Amandine, Zeddam Jean-Louis, Léry Xavier, Capdevielle Dulac C., Dangles Olivier, Silvain Jean-François. (2011). Inferring native range and invasion scenarios with mitochondrial DNA : the case of T. solanivora successive north-south step-wise introductions across Central and South America. Biological Invasions, 13 (7), p. 1505-1519. ISSN 1387-3547.
Identifiant IRD :
fdi:010053593
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Tranbarger Timothy, Dussert Stéphane, Joët Thierry, Argout X., Summo M., Champion Antony, Cros D., Omore A., Nouy B., Morcillo Fabienne. (2011). Regulatory mechanisms underlying oil palm fruit mesocarp maturation, ripening, and functional specialization in lipid and carotenoid metabolism. Plant Physiology, 156 (2), p. 564-584. ISSN 0032-0889.
Identifiant IRD :
fdi:010053583
-
Triplett L. R., Hamilton J. P., Buell C. R., Tisserat N. A., Verdier Valérie, Zink F., Leach J. E. (2011). Genomic analysis of Xanthomonas oryzae isolates from rice grown in the United States reveals substantial divergence from Known X. oryzae pathovars. Applied and Environmental Microbiology, 77 (12), p. 3930-3937. ISSN 0099-2240.
Identifiant IRD :
fdi:010053581
-
Vieira A., Talhinhas P., Loureiro A., Duplessis S., Fernandez Diana, Silva M. D., Paulo O. S., Azinheira H. G. (2011). Validation of RT-qPCR reference genes for in planta expression studies in Hemileia vastatrix, the causal agent of coffee leaf rust. Fungal Biology, 115 (9), p. 891-901. ISSN 1878-6146.
Identifiant IRD :
fdi:010053872
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Wonni I., Detemmerman L., Dao S., Ouédraogo L., Soungalo S., Koita O., Szurek Boris, Koebnik Ralf, Triplett L., Cottyn B., Verdier Valérie. (2011). Genetic diversity of Xanthomonas oryzae pv. oryzicola from West Africa. Phytopathology, 101 (6), p. S193-S193. ISSN 0031-949X.
Identifiant IRD :
fdi:010053850
-
Wonni I., Ouedraogo L., Verdier Valérie. (2011). First report of bacterial leaf streak caused by Xanthomonas oryzae pv. oryzicola on rice in Burkina Faso. Plant Disease, 95 (1), p. 72-73. ISSN 0191-2917.
Identifiant IRD :
fdi:010053020
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Yu Yanhua, Streubel J., Balzergue S., Champion Antony, Boch J., Koebnik Ralf, Feng J. X., Verdier Valérie, Szurek Boris. (2011). Colonization of rice leaf blades by an African strain of Xanthomonas oryzae pv. oryzae depends on a new TAL effector that Induces the rice nodulin-3 os11N3 gene. Molecular Plant-Microbe Interactions, 24 (9), p. 1102-1113. ISSN 0894-0282.
Identifiant IRD :
fdi:010053778
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Zarei A., Körbes A.P., Younessi P., Montiel G., Champion Antony, Memelink J. (2011). Two GCC boxes and AP2/ERF-domain transcription factor ORA59 in jasmonate/ethylene-mediated activation of the PDF1.2 promoter in Arabidopsis. Plant Molecular Biology, 75 (4-5), p. 321-331. ISSN 0167-4412.
Identifiant IRD :
fdi:010060017
2010
Articles référencés dans le Web of Science
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Albuquerque E. V. S., Carneiro Rmdg, Costa P. M., Gomes A. C. M., Santos M., Pereira A. A., Nicole Michel, Fernandez Diana, Grossi-De-Sa M. F. (2010). Resistance to Meloidogyne incognita expresses a hypersensitive-like response in Coffea arabica. European Journal of Plant Pathology, 127 (3), p. 365-373. ISSN 0929-1873.
Identifiant IRD :
fdi:010049559
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Anthony François, Diniz L. E. C., Combes Marie-Christine, Lashermes Philippe. (2010). Adaptive radiation in Coffea subgenus Coffea L. (Rubiaceae) in Africa and Madagascar. Plant Systematics and Evolution, 285 (1-2), p. 51-64. ISSN 0378-2697.
Identifiant IRD :
fdi:010049386
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Azinheira H. G., Silva M. D., Talhinhas P., Medeira C., Maia I., Petitot Anne-Sophie, Fernandez Diana. (2010). Non-host resistance responses of Arabidopsis thaliana to the coffee leaf rust fungus (Hemileia vastatrix). Botany - Botanique, 88 (7), p. 621-629. ISSN 1916-2790.
Identifiant IRD :
fdi:010065794
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Bellafiore Stéphane, Briggs S. P. (2010). Nematode effectors and plant responses to infection. Current Opinion in Plant Biology, 13 (4), p. 442-448. ISSN 1369-5266.
Identifiant IRD :
fdi:010049725
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Cenci Alberto, Combes Marie-Christine, Lashermes Philippe. (2010). Comparative sequence analyses indicate that Coffea (Asterids) and Vitis (Rosids) derive from the same paleo-hexaploid ancestral genome. Molecular Genetics and Genomics, 283 (5), p. 493-501. ISSN 1617-4615.
Identifiant IRD :
fdi:010049477
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Chabrier C., Tixier P., Duyck P. F., Carles C., Quénéhervé Patrick. (2010). Factors influencing the survivorship of the burrowing nematode, Radopholus similis (Cobb.) Thorne in two types of soil from banana plantations in Martinique. Applied Soil Ecology, 44 (2), p. 116-123. ISSN 0929-1393.
Identifiant IRD :
fdi:010049323
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Espinel-Correal C., Léry Xavier, Villamizar L., Gomez J., Zeddam Jean-Louis, Cotes A. M., Lopez-Ferber M. (2010). Genetic and biological analysis of Colombian Phthorimaea operculella Granulovirus isolated from Tecia solanivora (Lepidoptera : Gelechiidae). Applied and Environmental Microbiology, 76 (22), p. 7617-7625. ISSN 0099-2240.
Identifiant IRD :
fdi:010052920
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Freire E. V., Albuquerque E., Fernandez Diana, Petitot Anne-Sophie, Nicole Michel, Grossi-de-Sa M. (2010). Resistance and susceptibility expression profiles of Coffea arabica during root-knot nematode early infection. In Vitro Cellular and Developmental Biology. Animal, 46 (Suppl. 1), p. 115-115. ISSN 1071-2690.
Identifiant IRD :
fdi:010053015
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Gibbs A. J., Fargette Denis, Garcia-Arenal F., Gibbs M. J. (2010). Time - the emerging dimension of plant virus studies. Journal of General Virology, 91 (Part 1), p. 13-22. ISSN 0022-1317.
Identifiant IRD :
fdi:010049225
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Gomes A. C. M. M., Nicole Michel, Mattos J. K., Pereira S. I. V., Pereira P., Silva D. B., Vieira R., Capdeville de G., Moita A. W., Carneiro R. M. D. G. (2010). Concentration of beta-ecydisone (20E) in susceptible and resistant accessions of Pfaffia glomerata infected with Meloidogyne incognita and histological characterisation of resistance. Nematology, 12 (Part 5), p. 701-709. ISSN 1388-5545.
Identifiant IRD :
fdi:010052962
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Hébrard Eugénie, Poulicard Nils, Gérard C., Traoré O., Wu H. C., Albar Laurence, Fargette Denis, Bessin Y., Vignols F. (2010). Direct interaction between the Rice yellow mottle virus (RYMV) VPg and the central domain of the Rice eIF(iso)4G1 factor correlates with rice susceptibility and RYMV Virulence. Molecular Plant-Microbe Interactions, 23 (11), p. 1506-1513. ISSN 0894-0282.
Identifiant IRD :
fdi:010052899
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Houel C., Bounon R., Chaib J., Guichard C., Peros J. P., Bacilieri R., Dereeper Alexis, Canaguier A., Lacombe T., N'Diaye A., Le Paslier M. C., Vernerey M. S., Coriton O., Brunel D., This P., Torregrosa L., Adam-Blondon A. F. (2010). Patterns of sequence polymorphism in the fleshless berry locus in cultivated and wild Vitis vinifera accessions. Bmc Plant Biology, 10, p. 284. ISSN 1471-2229.
Identifiant IRD :
fdi:010053345
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Lacombe Séverine, Bangratz Martine, Vignols Florence, Brugidou Christophe. (2010). The rice yellow mottle virus P1 protein exhibits dual functions to suppress and activate gene silencing. Plant Journal, 61 (3), p. 371-382. ISSN 0960-7412.
Identifiant IRD :
fdi:010049231
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Lashermes Philippe, Combes Marie-Christine, Ribas Alessandra, Cenci Alberto, Mahé L., Etienne H. (2010). Genetic and physical mapping of the S(H)3 region that confers resistance to leaf rust in coffee tree (Coffea arabica L.). Tree Genetics and Genomes, 6 (6), p. 973-980. ISSN 1614-2942.
Identifiant IRD :
fdi:010052939
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Menendez-Yuffa A., Bertrand B., Georget F., Jourdan I., Lashermes Philippe, Malo E., Montagnon C., Santoni S., Tollon C., Etienne H. (2010). Microsatellite polymorphism in hybrids of Coffea arabica (L.) produced industrially by somatic embryogenesis. In Vitro Cellular and Developmental Biology-Animal, 46 (Suppl. 1), p. 141-142. ISSN 1071-2690.
Identifiant IRD :
fdi:010053016
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Poulicard Nils, Pinel Galzi Agnès, Hébrard Eugénie, Fargette Denis. (2010). Why Rice yellow mottle virus, a rapidly evolving RNA plant virus, is not efficient at breaking rymv1-2 resistance. Molecular Plant Pathology, 11 (1), p. 145-154. ISSN 1464-6722.
Identifiant IRD :
fdi:010049198
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Quénéhervé Patrick, Marie-Luce S., Salmon F., Barrière V. (2010). Xenic culturing of plant-parasitic nematodes : artificial substrates better than soil-based culture systems ?. Nematropica, 40 (2), p. 269-274. ISSN 0099-5444.
Identifiant IRD :
fdi:010053414
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Ramiro Daniel, Jalloul A., Petitot Anne-Sophie, Grossi de Sa M. F., Maluf M., Fernandez Diana. (2010). Identification of coffee WRKY transcription factor genes and expression profiling in resistance responses to pathogens. Tree Genetics and Genomes, 6 (5), p. 767-781. ISSN 1614-2942.
Identifiant IRD :
fdi:010049085
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Traoré O., Pinel Galzi Agnès, Issaka S., Poulicard Nils, Aribi Jamel, Aké S., Ghesquière Alain, Séré Y., Konaté G., Hébrard Eugénie, Fargette Denis. (2010). The adaptation of Rice yellow mottle virus to the eIF(iso)4G-mediated rice resistance. Virology, 408 (1), p. 103-108. ISSN 0042-6822.
Identifiant IRD :
fdi:010052951
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Villain L., Aribi Jamel, Reversat Georges, Anthony François. (2010). A high-throughput method for early screening of coffee (Coffea spp.) genotypes for resistance to root-knot nematodes (Meloidogyne spp.). European Journal of Plant Pathology, 128 (4), p. 451-458. ISSN 0929-1873.
Identifiant IRD :
fdi:010052976
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Zeddam Jean-Louis, Gordon K. H. J., Lauber C., Alves C. A. F., Luke B. T., Hanzlik T. N., Ward V. K., Gorbalenya A. E. (2010). Euprosterna elaeasa virus genome sequence and evolution of the Tetraviridae family : emergence of bipartite genomes and conservation of the VPg signal with the dsRNA Birnaviridae family. Virology, 397 (1), p. 145-154. ISSN 0042-6822.
Identifiant IRD :
fdi:010049280
Articles
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Carpio C., Zeddam Jean-Louis, Barragan A., Nunez G., Patino M., Dangles Olivier. (2010). Un metodo cuantitativo para medir el area de tuberculo danado por larvas de Tecia solanivora (Lep.; Glechiidae) a través de analisis de imagenes digitales. Revista Ecuatoriana de Medicina y Ciencias Biologicas, 31 (1-2), p. 69-78.
Identifiant IRD :
fdi:010053934
Chapitres ou parties d'ouvrages
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Dupas Stéphane, Silvain Jean-François, Villamizar L., Lopez Avilla A., Cotes Prado A.M., Zeddam Jean-Louis, Dangles Olivier, Samaniego C., Caceres M., Changoluisa C., Rosero P., Maiguashca J., Montufar R. (2010). Risques entomologiques associés à l'extension de la monoculture de pomme de terre en zone nord-andine. In :
Nivet C. (ed.), McKey D. (ed.), Legris C. (ed.). Connaissance et gestion des écosystèmes tropicaux : résultats du programme de recherche "écosystèmes tropicaux" 2005-2010. Paris ; Paris : ECOFOR ; MEEDDM, p. 107-117. ISBN 978-2-914770-02-6.
Identifiant IRD :
fdi:010051755
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Lashermes Philippe, Carvalho Andrade A., Etienne H. (2010). Genomics of coffee, one of the world's largest traded commodities. In :
Moore P.H. (ed.), Ming R (ed.). Genomics fo tropical crops. New York : Springer, p. 203-225. (Plant Genetics and Genomics : Crops and Models ; 1). ISBN 978-1-4419-2433-9.
Identifiant IRD :
fdi:010051380
2009
Articles référencés dans le Web of Science
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Albuquerque E. V. S., Cunha W. G., Barbosa A. E. A. D., Costa P. M., Teixeira J. B., Vianna G. R., Cabral G. B., Fernandez Diana, Grossi-de-Sa M. F. (2009). Transgenic coffee fruits from Coffea arabica genetically modified by bombardment. In Vitro Cellular and Developmental Biology - Plant, 45 (5), p. 532-539. ISSN 1054-5476.
Identifiant IRD :
fdi:010048375
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Boisseau M., Aribi Jamel, Rodriguez de Sousa F., Carneiro R. M. D. G., Anthony François. (2009). Resistance to Meloidogyne paranaensis in wild Coffea arabica. Tropical Plant Pathology, 34 (1), p. 38-41. ISSN 1982-5676.
Identifiant IRD :
fdi:010048224
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Cacas Jean-Luc, Marmey Philippe, Montillet J. L., Sayegh-Alhamdia Majd, Jalloul A., Rojas-Mendoza A., Clérivet Alain, Nicole Michel. (2009). A novel patatin-like protein from cotton plant, GhPat1, is co-expressed with GhLox1 during Xanthomonas campestris-mediated hypersensitive cell death. Plant Cell Reports, 28 (1), p. 155-164. ISSN 0721-7714.
Identifiant IRD :
fdi:010048299
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Chabrier C., Carles C., Desrosiers C., Quénéhervé Patrick, Cabidoche Y. M. (2009). Nematode dispersion by runoff water : case study of Radopholus similis (Cobb) Thorne on nitisol under humid tropical conditions. Applied Soil Ecology, 41 (2), p. 148-156. ISSN 0929-1393.
Identifiant IRD :
fdi:010044306
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Champion Antony, Hébrard Eugénie, Parra B., Bournaud C., Marmey Philippe, Tranchant Dubreuil Christine, Nicole Michel. (2009). Molecular diversity and gene expression of cotton ERF transcription factors reveal that group IXa members are responsive to jasmonate, ethylene and Xanthomonas. Molecular Plant Pathology, 10 (4), p. 471-485. ISSN 1464-6722.
Identifiant IRD :
fdi:010046150
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Deus Barbosa de A. E. A., Rocha Fragoso da D., Lima e Souza de D. D. S., Freire Erika, Oliveira Neto de O. B., Viana A. A. B., Togawa R. C., Guimaraes L. M., Martins N. F., Cia E., Fernandez Diana, Lima de L. M., Matar Silva M. C., Lima Rocha T., Grossi de Sa M. F. (2009). Differentially expressed genes in cotton plant genotypes infected with Meloidogyne incognita. Plant Science, 177 (5), p. 492-497. ISSN 0168-9452.
Identifiant IRD :
fdi:010048202
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Dulloo M. E., Ebert A. W., Dussert Stéphane, Gotor E., Astorga C., Vasquez N., Rakotomalala J. J., Rabemiafara A., Eira M., Bellachew B., Omondi C., Engelmann Florent, Anthony François, Watts J., Qamar Z., Snook L. (2009). Cost efficiency of cryopreservation as a long-term conservation method for coffee genetic resources. Crop Science, 49 (6), p. 2123-2138. ISSN 0011-183X.
Identifiant IRD :
fdi:010082541
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Duyck P. F., Pavoine S., Tixier P., Chabrier C., Quénéhervé Patrick. (2009). Host range as an axis of niche partitioning in the plant-feeding nematode community of banana agroecosystems. Soil Biology and Biochemistry, 41 (6), p. 1139-1145. ISSN 0038-0717.
Identifiant IRD :
fdi:010046157
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Guerra-Guimares L., Silva M. C., Struck C., Loureiro A., Nicole Michel, Rodrigues C. J., Ricardo C. P. P. (2009). Chitinases of Coffea arabica genotypes resistant to orange rust Hemileia vastatrix. Biologia Plantarum, 53 (4), p. 702-706. ISSN 0006-3134.
Identifiant IRD :
fdi:010048428
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Hébrard Eugénie, Bessin Y., Michon T., Longhi S., Uversky V.N., Delalande F., Van Dorsselaer A., Romero P., Walter J., Declerck N., Fargette Denis. (2009). Intrinsic disorder in viral proteins genome-linked : experimental and predictive analyses. Virology Journal, 6 (23), p. 1-34. ISSN 1743-422X.
Identifiant IRD :
fdi:010047687
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Herrera P. J. C., Alvarado A. V., Cortina G. H. A., Combes Marie-Christine, Romero G. G., Lashermes Philippe. (2009). Genetic analysis of partial resistance to coffee leaf rust (Hemileia vastatrix Berk & Br.) introgressed into the cultivated Coffea arabica L. from the diploid C. canephora species. Euphytica, 167 (1), p. 57-67. ISSN 0014-2336.
Identifiant IRD :
fdi:010046005
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Jalloul A., Clérivet Alain, Nicole Michel. (2009). La signalisation hormonale dans la résistance des plantes aux bioagresseurs = Hormone signalling in plant resistance. Cahiers Agricultures, 18 (6), p. 493-497. ISSN 1166-7699.
Identifiant IRD :
fdi:010048482
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Pinel Galzi Agnès, Mpunami A., Sangu E., Rakotomalala M., Traoré O., Sérémé D., Sorho F., Séré Y., Kanyeka Z., Konaté G., Fargette Denis. (2009). Recombination, selection and clock-like evolution of Rice yellow mottle virus. Virology, 394 (1), p. 164-172. ISSN 0042-6822.
Identifiant IRD :
fdi:010048347
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Posada H., Ferrand M., Davrieux F., Lashermes Philippe, Bertrand B. (2009). Stability across environments of the coffee variety near infrared spectral signature. Heredity, 102 (2), p. 113-119. ISSN 0018-067X.
Identifiant IRD :
fdi:010053045
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Quénéhervé Patrick, Salmon F., Topart Patrick, Horry J. P. (2009). Nematode resistance in bananas : screening results on some new Mycosphaerella resistant banana hybrids. Euphytica, 165 (1), p. 137-143. ISSN 0014-2336.
Identifiant IRD :
fdi:010053054
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Quénéhervé Patrick, Valette C., Topart Patrick, Tezenas du Montcel H., Salmon F. (2009). Nematode resistance in bananas : screening results on some wild and cultivated accessions of Musa spp. Euphytica, 165 (1), p. 123-136. ISSN 0014-2336.
Identifiant IRD :
fdi:010053053
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Ramiro Daniel, Escoute J., Petitot Anne-Sophie, Nicole Michel, Maluf M. P., Fernandez Diana. (2009). Biphasic haustorial differentiation of coffee rust (Hemileia vastatrix race II) associated with defence responses in resistant and susceptible coffee cultivars. Plant Pathology, 58 (5), p. 944-955. ISSN 0032-0862.
Identifiant IRD :
fdi:010048264
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Reynaud B., Delatte H., Peterschmitt M., Fargette Denis. (2009). Effects of temperature increase on the epidemiology of three major vector-borne viruses. European Journal of Plant Pathology, 123 (3), p. 269-280. ISSN 0929-1873.
Identifiant IRD :
fdi:010044247
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Sorho F., Pinel Galzi Agnès, Traore O., Rakotomalala M. S., Sangu E., Kanyeka Z., Hébrard Eugénie, Konte G., Sere Y., Fargette Denis, Ake S. (2009). Rate of substitution, date of emergence and speed of dispersal of Rice Yellow Mottle Virus in Africa. Infection Genetics and Evolution, 9 (3), p. 381-381. ISSN 1567-1348.
Identifiant IRD :
fdi:010046098
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Stoffelen P., Noirot Michel, Couturon Emmanuel, Bontems S., De Block P., Anthony François. (2009). Coffea anthonyi, a new self-compatible Central African coffee species, closely related to an ancestor of Coffea arabica. Taxon, 58 (1), p. 133-140. ISSN 0040-0262.
Identifiant IRD :
fdi:010044320
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Traoré O., Pinel Galzi Agnès, Sorho F., Sarra S., Rakotomalala M., Sangu E., Kanyeka Z., Séré Y., Konaté G., Fargette Denis. (2009). A reassessment of the epidemiology of Rice yellow mottle virus following recent advances in field and molecular studies. Virus Research, 141 (2), p. 258-267. ISSN 0168-1702.
Identifiant IRD :
fdi:010046040
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Villarreal D., Laffargue Andreina, Posada H., Bertrand B., Lashermes Philippe, Dussert Stéphane. (2009). Genotypic and environmental effects on coffee (Coffea arabica L.) bean fatty acid profile : impact on variety and origin chemometric determination. Journal of Agricultural and Food Chemistry, 57 (23), p. 11321-11327. ISSN 0021-8561.
Identifiant IRD :
PAR00004379
Chapitres ou parties d'ouvrages
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Fargette Denis, Hébrard Eugénie, Traoré O., Konaté G. (2009). Annexe 18 : épidémiologie et évolution des virus de riz. In :
Guégan Jean-François (ed.), Choisy Marc (ed.). Introduction à l'épidémiologie intégrative des maladies infectieuses et parasitaires. Bruxelles : De Boeck, p. 496. (lMD.Licence Maîtrise Doctorat.Cours Biologie). ISBN 978-2-8041-5948-1.
Identifiant IRD :
fdi:010046876
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Fargette Denis, Konate G., Hébrard Eugénie, Traore O. (2009). De l'épidémiologie classique à l'épidémiologie moléculaire : reconstitution de la biogéographie du virus de la panachure jaune du riz en Afrique. In :
Guégan Jean-François (ed.), Choisy Marc (ed.). Introduction à l'épidémiologie intégrative des maladies infectieuses et parasitaires. Bruxelles : De Boeck, p. 457-475. (LMD.Licence Maîtrise Doctorat.Cours Biologie). ISBN 978-2-8041-5948-1.
Identifiant IRD :
fdi:010046868
2008
Articles référencés dans le Web of Science
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Alpizar E., Dechamp E., Lapeyre Montes F., Guilhaumon C., Bertrand B., Jourdan C., Lashermes Philippe, Etienne H. (2008). Agrobacterium rhizogenes-transformed roots of coffee (Coffea arabica) : Conditions for long-term proliferation, and morphological and molecular characterization. Annals of Botany, 101 (7), p. 929-940. ISSN 0305-7364.
Identifiant IRD :
PAR00002416
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Bedhomme M., Jouannic Stefan, Champion Antony, Simanis V., Henry Y. (2008). Plants, MEN and SIN. Plant Physiology and Biochemistry, 46 (1), p. 1-10. ISSN 0981-9428.
Identifiant IRD :
fdi:010042480
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Bertrand B., Villarreal D., Laffargue Andréina, Posada H., Lashermes Philippe, Dussert Stéphane. (2008). Comparison of the effectiveness of fatty acids, chlorogenic acids, and elements for the chemometric discrimination of coffee (Coffea arabica L.) varieties and growing origins. Journal of Agricultural and Food Chemistry, 56 (6), p. 2273-2280. ISSN 0021-8561.
Identifiant IRD :
PAR00002289
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Blanc M., Uzest M., Candresse T., Drucker M., Fereres A., Gargani D., Garzo E., Hébrard Eugénie. (2008). Une protéine clé pour la transmission d'un virus de plante à la pointe des stylets de l'insecte vecteur. Virologie, 12 (1), p. 70-72. ISSN 1267-8694.
Identifiant IRD :
fdi:010065949
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Chabrier C., Carles C., Quenehervé Patrick, Cabidoche Y. M. (2008). Nematode dissemination by water leached in soil : case study of Radopholus similis (Cobb) Thorne on nitisol under simulated rainfall. Applied Soil Ecology, 40 (2), p. 299-308. ISSN 0929-1393.
Identifiant IRD :
fdi:010044046
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Chabrier C., Quénéhervé Patrick. (2008). Preventing nematodes from spreading : a case study with Radopholus similis (Cobb) thorne in a banana field. Crop Protection, 27 (9), p. 1237-1243. ISSN 0261-2194.
Identifiant IRD :
fdi:010042685
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Cubry P., Musoli P., Legnate H., Pot D., de Bellis F., Poncet Valérie, Anthony François, Dufour M., Leroy T. (2008). Diversity in coffee assessed with SSR markers : structure of the genus Coffea and perspectives for breeding. Genome, 51 (1), p. 50-63. ISSN 0831-2796.
Identifiant IRD :
fdi:010040985
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Fargette Denis, Pinel Galzi Agnès, Sérémé D., Lacombe Séverine, Hébrard Eugénie, Traoré O., Konaté G. (2008). Diversification of Rice Yellow Mottle Virus and related viruses spans the history of agriculture from the neolithic to the present. PloS Pathogens, 4 (8), p. 1-8 (art. no e1000125).
Identifiant IRD :
fdi:010045298
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Fargette Denis, Pinel Agnès, Rakotomalala M., Sangu E., Traoré O., Sérémé D., Sorho F., Issaka S., Hébrard Eugénie, Sere Y., Kanyeka Z., Konaté G. (2008). Rice Yellow Mottle Virus, an RNA plant virus, evolves as rapidly as most RNA animal viruses. Journal of Virology, 82 (7), p. 3584-3589. ISSN 0022-538X.
Identifiant IRD :
fdi:010043238
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Gichuru E. K., Agwanda C. O., Combes Marie-Christine, Mutitu E. W., Ngugi E. C. K., Bertrand B., Lashermes Philippe. (2008). Identification of molecular markers linked to a gene conferring resistance to coffee berry disease (Colletotrichum kahawae) in Coffea arabica. Plant Pathology, 57 (6), p. 1117-1124. ISSN 0032-0862.
Identifiant IRD :
fdi:010044146
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Hébrard Eugénie, Pinel Galzi Agnès, Fargette Denis. (2008). Virulence domain of the RYMV genome-linked viral protein VPg towards rice rymv1-2-mediated resistance. Archives of Virology, 153 (6), p. 1161-1164. ISSN 1432-8798.
Identifiant IRD :
fdi:010045293
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Mahé Laetitia, Combes Marie-Christine, Varzea V. M. P., Guilhaumon Claire, Lashermes Philippe. (2008). Development of sequence characterized DNA markers linked to leaf rust (Hemileia vastatrix) resistance in coffee (Coffea arabica L.). Molecular Breeding, 21 (1), p. 105-113. ISSN 1380-3743.
Identifiant IRD :
fdi:010042527
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Petitot Anne-Sophie, Lecouls Anne-Claire, Fernandez Diana. (2008). Sub-genomic origin and regulation patterns of a duplicated WRKY gene in the allotetraploid species Coffea arabica. Tree Genetics and Genomes, 4 (3), p. 379-390. ISSN 1614-2942.
Identifiant IRD :
fdi:010042613
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Rakotomalala M., Pinel Galzi Agnès, Albar Laurence, Ghesquière Alain, Rabenantoandro Y., Ramavovololona P., Fargette Denis. (2008). Resistance to Rice yellow mottle virus in rice germplasm in Madagascar. European Journal of Plant Pathology, 122 (2), 277-286. ISSN 0929-1873.
Identifiant IRD :
fdi:010042759
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Sayegh-Alhamdia Majd, Marmey Philippe, Jalloul A., Champion Antony, Petitot Anne-Sophie, Clérivet Alain, Nicole Michel. (2008). Association of lipoxygenase response with resistance of various cotton genotypes to the bacterial blight disease. Journal of Phytopathology-Phytopathologische Zeitschrift, 156 (9), p. 542-549. ISSN 0931-1785.
Identifiant IRD :
fdi:010042717
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Sere Y., Sorho F., Onasanya A., Jobe L., Darboe S., Bojang Y., Touray M. L., Pinel Galzi Agnès, Fargette Denis. (2008). First report of rice yellow mottle virus in rice in the Gambia. Plant Disease, 92 (2), p. 316. ISSN 0191-2917.
Identifiant IRD :
PAR00002154
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Sérémé D., Lacombe Séverine, Konaté M., Pinel Galzi Agnès, Traoré V. S. E., Hébrard Eugénie, Traoré O., Brugidou Christophe, Fargette Denis, Konaté G. (2008). Biological and molecular characterization of a putative new sobemovirus infecting Imperata cylindrica and maize in Africa. Archives of Virology, 153 (10), p. 1813-1820. ISSN 0304-8608.
Identifiant IRD :
fdi:010044053
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Silva M. C., Guerra-Guimaraes L., Loureiro A., Nicole Michel. (2008). Involvement of peroxidases in the coffee resistance to orange rust (Hemileia vastatrix). Physiological and Molecular Plant Pathology, 72 (1-3), p. 29-38. ISSN 0885-5765.
Identifiant IRD :
fdi:010044226
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Siré Christelle, Bangratz Reyser Martine, Fargette Denis, Brugidou Christophe. (2008). Genetic diversity and silencing suppression effects of Rice yellow mottle virus and the P1 protein - art. no. 55. Virology Journal, 5, p. NIL_1-NIL_12. ISSN 1743-422X.
Identifiant IRD :
fdi:010042614
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Stoffelen P., Noirot Michel, Couturon Emmanuel, Anthony François. (2008). A new caffeine-free coffee from Cameroon. Botanical Journal of the Linnean Society, 158 (1), p. 67-72. ISSN 0024-4074.
Identifiant IRD :
fdi:010042785
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Tixier P., Salmon F., Chabrier C., Quénéhervé Patrick. (2008). Modelling pest dynamics of new crop cultivars : the FB920 banana with the Helicotylenchus multicinctus-Radopholus similis nematode complex in Martinique. Crop Protection, 27 (11), p. 1427-1431. ISSN 0261-2194.
Identifiant IRD :
fdi:010044114
Chapitres ou parties d'ouvrages
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Bertrand B., Anthony François. (2008). Genetics of resistance to root-knot nematodes (Moloidogyne spp.) and breeding. In :
Souza R.M. (ed.). Plant-parasitic nematodes of coffee. Springer, p. 165-190. ISBN 978-1-4020-8719-6.
Identifiant IRD :
fdi:010066813
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Hébrard Eugénie. (2008). Rice Yellow Mottle Virus. In :
Govind P.R. (ed.), Bragard C. (ed.), Lebas B.S.M. (ed.). Characterization diagnosis and management of plant viruses. Vol. 4 : Grain crops and ornamentals. s.l. : Studium Press, 4, p. 485-490. (Plant Pathogen Series). ISBN 1-933699-34-5.
Identifiant IRD :
fdi:010069889
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Hébrard Eugénie, Fargette Denis, Konaté G. (2008). Rice Yellow Mottle Virus. In :
Mahy B.W.J. (ed.), Van Regenmortel M.H.V. (ed.). Encyclopedia of virology. Oxford : Elsevier, p. 485-490. ISBN 978-0-12-374410-4.
Identifiant IRD :
fdi:010069672
Colloques, congrès, séminaires
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Nicole Michel. (2008). Hormone et résistance des plantes. In :
Actes du colloque biotechnologies végétales et gestion durable des résistances face à des stress biotiques et abiotiques. Montréal : AUF, p. 64. Journées Scientifiques du Réseau Biotechnologies Végétales et Amélioration des Plantes de l'AUF ; Colloque BIOTECH.Biotechnologies Végétales et Gestion Durable des Résistances Face à des Stress Biotiques et Abiotiques, 11., Rennes (FRA), 2008/06/30-2008/07/03.
Identifiant IRD :
fdi:010043927
2007
Articles référencés dans le Web of Science
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Herrera J. C., D' Hont A., Lashermes Philippe. (2007). Use of fluorescence in situ hybridization as a tool for introgression analysis and chromosome identification in coffee (Coffea arabica L.). Genome, 50 (7), p. 619-626. ISSN 0831-2796.
Identifiant IRD :
fdi:010040804
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Mahé Laetitia, Combes Marie-Christine, Lashermes Philippe. (2007). Comparison between a coffee single copy chromosomal region and Arabidopsis duplicated counterparts evidenced high level synteny between the coffee genome and the ancestral Arabidopsis genome. Plant Molecular Biology, 64 (6), p. 699-711. ISSN 0167-4412.
Identifiant IRD :
fdi:010040698
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Mahé Laetitia, Le Pierres Daniel, Combes Marie-Christine, Lashermes Philippe. (2007). Introgressive hybridization between the allotetraploid Coffea arabica and one of its diploid ancestors, Coffea canephora, in an exceptional sympatric zone in New Caledonia. Genome, 50 (3), p. 316-324. ISSN 0831-2796.
Identifiant IRD :
fdi:010037996
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Mahé Laetitia, Varzea V.M.P., Le Pierrès Daniel, Combes Marie-Christine, Lashermes Philippe. (2007). A new source of resistance against coffee leaf rust from New-Caledonian natural interspecific hybrids between Coffea arabica and Coffea canephora. Plant Breeding, 126 (6), p. 638-641. ISSN 0179-9541.
Identifiant IRD :
fdi:010040903
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Marmey Philippe, Jalloul A., Alhamdia Majd, Assigbetsé Komi, Cacas J. L., Voloudakis A. E., Champion Antony, Clérivet A., Montillet J. L., Nicole Michel. (2007). The 9-lipoxygenase GhLOX1 gene is associated with the hypersensitive reaction of cotton Gossypium hirsutum to Xanthomonas campestris pv malvacearum. Plant Physiology and Biochemistry, 45 (8), p. 596-606. ISSN 0981-9428.
Identifiant IRD :
fdi:010040755
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Obertello Mariana, Wall L., Laplaze Laurent, Nicole Michel, Auguy Florence, Gherbi Hassen, Bogusz Didier, Franche Claudine. (2007). Functional analysis of the metallothionein gene cgMT1 isolated from the actinorhizal tree Casuarina glauca. Molecular Plant Microbe Interactions, 20 (10), p. 1231-1240. ISSN 0894-0282.
Identifiant IRD :
fdi:010040911
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Pinel Galzi Agnès, Rakotomalala M., Sangu E., Sorho F., Kanyeka Z., Traoré O., Sérémé D., Poulicard Nils, Rabenantoandro Y., Séré Y., Konaté G., Ghesquière Alain, Hébrard Eugénie, Fargette Denis. (2007). Theme and variations in the evolutionary pathways to virulence of an RNA plant virus species. PLoS Pathogens, 3 (11), p. 1761-1770 [art. no. e180]. ISSN 1553-7366.
Identifiant IRD :
fdi:010040914
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Uzest M., Gargani D., Drucker M., Hébrard Eugénie, Garzo E., Candresse T., Fereres A., Blanc S. (2007). A protein key to plant virus transmission at the tip of the insect vector stylet. Proceedings of the National Academy of Sciences of the United States of America, 104 (46), p. 17959-17964. ISSN 0027-8424.
Identifiant IRD :
fdi:010040918
Articles
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Kanyeka Z.L., Sangu E., Fargette Denis, Pinel Galzi Agnès, Hébrard Eugénie. (2007). Distribution and diversity of local strains of rice yellow mottle virus in Tanzania. African Crop Science Journal, 15 (4), p. 201-209. ISSN 1021-9730.
Identifiant IRD :
fdi:010051716
Directions d'ouvrages ou de revues
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Engelmann Florent (ed.), Dulloo M.E. (ed.), Astorga C. (ed.), Dussert Stéphane (ed.), Anthony François (ed.). (2007). Conserving coffee genetic resources : complementary strategies for ex situ conservation of coffee (Coffea arabica L.) genetic resources : a case study in CATIE, Costa Rica.
Rome ; Paris : Biodiversity International ; IRD, 61 p. ISBN 978-92-9043-752-9.
Identifiant IRD :
fdi:010041784
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Quénéhervé Patrick (dir.). (2007). Pollution des sols par la chlordecone : impact sur la qualité des milieux et des produits agricoles. Les Cahiers du PRAM, (7), 66 p. ISSN 1638-3974.
Identifiant IRD :
fdi:010045125
Chapitres ou parties d'ouvrages
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Anthony François, Astorga C., Avendano J., Dulloo E. (2007). Conservation of coffee genetic resources in the CATIE field genebank. In :
Engelmann Florent (ed.), Dulloo M.E. (ed.), Astorga C. (ed.), Dussert Stéphane (ed.), Anthony François (ed.). Conserving coffee genetic resources : complementary strategies for ex situ conservation of coffee (Coffea arabica L.) genetic resources : a case study in CATIE, Costa Rica. Rome ; Paris : Biodiversity International ; IRD, p. 23-34. ISBN 978-92-9043-752-9.
Identifiant IRD :
fdi:010041787
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Anthony François, Bertrand B., Astorga C., Lashermes Philippe. (2007). Characterization and assessment of Coffea arabica L. genetic resources conserved in the CATIE field genebank. In :
Engelmann Florent (ed.), Dulloo M.E. (ed.), Astorga C. (ed.), Dussert Stéphane (ed.), Anthony François (ed.). Conserving coffee genetic resources : complementary strategies for ex situ conservation of coffee (Coffea arabica L.) genetic resources : a case study in CATIE, Costa Rica. Rome ; Paris : Biodiversity International ; IRD, p. 35-44. ISBN 978-92-9043-752-9.
Identifiant IRD :
fdi:010041788
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Anthony François, Dussert Stéphane. (2007). Construction of coffee core collections. In :
Engelmann Florent (ed.), Dulloo M.E. (ed.), Astorga C. (ed.), Dussert Stéphane (ed.), Anthony François (ed.). Conserving coffee genetic resources : complementary strategies for ex situ conservation of coffee (Coffea arabica L.) genetic resources : a case study in CATIE, Costa Rica. Rome ; Paris : Biodiversity International ; IRD, p. 45-48. ISBN 978-92-9043-752-9.
Identifiant IRD :
fdi:010041789
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Anthony François, Dussert Stéphane, Dulloo E. (2007). Coffee genetic resources. In :
Engelmann Florent (ed.), Dulloo M.E. (ed.), Astorga C. (ed.), Dussert Stéphane (ed.), Anthony François (ed.). Conserving coffee genetic resources : complementary strategies for ex situ conservation of coffee (Coffea arabica L.) genetic resources : a case study in CATIE, Costa Rica. Rome ; Paris : Biodiversity International ; IRD, p. 12-22. ISBN 978-92-9043-752-9.
Identifiant IRD :
fdi:010041786
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Dussert Stéphane, Vasquez N., Salazar K., Anthony François, Engelmann Florent. (2007). Cryopreservation of coffee genetic resources. In :
Engelmann Florent (ed.), Dulloo M.E. (ed.), Astorga C. (ed.), Dussert Stéphane (ed.), Anthony François (ed.). Conserving coffee genetic resources : complementary strategies for ex situ conservation of coffee (Coffea arabica L.) genetic resources : a case study in CATIE, Costa Rica. Rome ; Paris : Biodiversity International ; IRD, p. 49-58. ISBN 978-92-9043-752-9.
Identifiant IRD :
fdi:010041790
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Engelmann Florent, Dulloo E., Dussert Stéphane, Anthony François. (2007). Conclusions and prospects. In :
Engelmann Florent (ed.), Dulloo M.E. (ed.), Astorga C. (ed.), Dussert Stéphane (ed.), Anthony François (ed.). Conserving coffee genetic resources : complementary strategies for ex situ conservation of coffee (Coffea arabica L.) genetic resources : a case study in CATIE, Costa Rica. Rome ; Paris : Biodiversity International ; IRD, p. 59-61. ISBN 978-92-9043-752-9.
Identifiant IRD :
fdi:010041791