Publications des scientifiques de l'IRD

Dereeper Alexis, Bocs S., Rouard M., Guignon V., Ravel Sébastien, Dubreuil Tranchant Christine, Poncet Valérie, Garsmeur O., Lashermes Philippe, Droc G. (2015). The coffee genome hub : a resource for coffee genomes. Nucleic Acids Research, 43 (D1), D1028-D1035. ISSN 0305-1048.

Titre du document
The coffee genome hub : a resource for coffee genomes
Année de publication
2015
Type de document
Article référencé dans le Web of Science WOS:000350210400151
Auteurs
Dereeper Alexis, Bocs S., Rouard M., Guignon V., Ravel Sébastien, Dubreuil Tranchant Christine, Poncet Valérie, Garsmeur O., Lashermes Philippe, Droc G.
Source
Nucleic Acids Research, 2015, 43 (D1), D1028-D1035 ISSN 0305-1048
The whole genome sequence of Coffea canephora, the perennial diploid species known as Robusta, has been recently released. In the context of the C. canephora genome sequencing project and to support post-genomics efforts, we developed the Coffee Genome Hub ( ext-link-type="uri" xlink:href="http://coffee-genome.org/" xlink:type="simple">http://coffee-genome.org/), an integrative genome information system that allows centralized access to genomics and genetics data and analysis tools to facilitate translational and applied research in coffee. We provide the complete genome sequence of C. canephora along with gene structure, gene product information, metabolism, gene families, transcriptomics, syntenic blocks, genetic markers and genetic maps. The hub relies on generic software (e.g. GMOD tools) for easy querying, visualizing and downloading research data. It includes a Genome Browser enhanced by a Community Annotation System, enabling the improvement of automatic gene annotation through an annotation editor. In addition, the hub aims at developing interoperability among other existing South Green tools managing coffee data (phylogenomics resources, SNPs) and/or supporting data analyses with the Galaxy workflow manager.
Plan de classement
Sciences du monde végétal [076] ; Informatique [122]
Identifiant IRD
fdi:010064052
Contact
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