Publications des scientifiques de l'IRD

Hily J. M., Komar V., Poulicard Nils, Velt A., Renault L., Mustin P., Vigne E., Spilmont A. S., Lemaire O. (2021). Evidence of differential spreading events of grapevine pinot Gris virus in Italy using datamining as a tool. European Journal of Plant Pathology, 161 (3), 735-742. ISSN 0929-1873.

Titre du document
Evidence of differential spreading events of grapevine pinot Gris virus in Italy using datamining as a tool
Année de publication
2021
Type de document
Article référencé dans le Web of Science WOS:000689659600002
Auteurs
Hily J. M., Komar V., Poulicard Nils, Velt A., Renault L., Mustin P., Vigne E., Spilmont A. S., Lemaire O.
Source
European Journal of Plant Pathology, 2021, 161 (3), 735-742 ISSN 0929-1873
Since its identification in 2003, grapevine Pinot gris virus (GPGV, Trichovirus) has now been detected in most grape-growing countries. So far, little is known about the epidemiology of this newly emerging virus. In this work, we used datamining as a tool to monitor in-silico the sanitary status of three vineyards in Italy. All data used in the study were recovered from a work that was already published and for which data were publicly available as SRA (Sequence Read Archive, NCBI) files. While incomplete, knowledge gathered from this work was still important, with evidence of differential accumulation of the virus in grapevine according to year, location, and variety-rootstock association. Additional data regarding GPGV genetic diversity were collected. Some advantages and pitfalls of datamining are discussed.
Plan de classement
Sciences du monde végétal [076]
Description Géographique
ITALIE
Localisation
Fonds IRD [F B010082739]
Identifiant IRD
fdi:010082739
Contact