Publications des scientifiques de l'IRD

Cousson A., Mahé F., Guyet U., Razafimahafaly D., Bernard Laetitia. (2025). NanoASV : a snakemake workflow for reproducible field-based Nanopore full-length 16S metabarcoding amplicon data analysis. Bioinformatics, 41 (3), btaf089 [4 p.]. ISSN 1367-4803.

Titre du document
NanoASV : a snakemake workflow for reproducible field-based Nanopore full-length 16S metabarcoding amplicon data analysis
Année de publication
2025
Type de document
Article référencé dans le Web of Science WOS:001482952000001
Auteurs
Cousson A., Mahé F., Guyet U., Razafimahafaly D., Bernard Laetitia
Source
Bioinformatics, 2025, 41 (3), btaf089 [4 p.] ISSN 1367-4803
NanoASV is a conda environment and snakemake-based workflow using state-of-the-art bioinformatics software to process full-length SSU rRNA (16S/18S) amplicons acquired with Oxford Nanopore Sequencing technology. Its strength lies in reproducibility, portability, and the possibility to run offline, allowing in-field analysis. It can be installed on the Nanopore MK1C sequencing device and process data locally.
Plan de classement
Sciences fondamentales / Techniques d'analyse et de recherche [020] ; Informatique [122]
Localisation
Fonds IRD [F B010093518]
Identifiant IRD
fdi:010093518
 Open Access  DOI  HAL
Contact