%0 Journal Article
%9 ACL : Articles dans des revues avec comité de lecture répertoriées par l'AERES
%A Cousson, A.
%A Mahé, F.
%A Guyet, U.
%A Razafimahafaly, D.
%A Bernard, Laetitia
%T NanoASV : a snakemake workflow for reproducible field-based Nanopore full-length 16S metabarcoding amplicon data analysis
%D 2025
%L fdi:010093518
%G ENG
%J Bioinformatics
%@ 1367-4803
%M ISI:001482952000001
%N 3
%P btaf089 [4 ]
%R 10.1093/bioinformatics/btaf089
%U https://www.documentation.ird.fr/hor/fdi:010093518
%> https://horizon.documentation.ird.fr/exl-doc/pleins_textes/2025-06/010093518.pdf
%V 41
%W Horizon (IRD)
%X NanoASV is a conda environment and snakemake-based workflow using state-of-the-art bioinformatics software to process full-length SSU rRNA (16S/18S) amplicons acquired with Oxford Nanopore Sequencing technology. Its strength lies in reproducibility, portability, and the possibility to run offline, allowing in-field analysis. It can be installed on the Nanopore MK1C sequencing device and process data locally.
%$ 020 ; 122