Matra D. D., Adrian M., Karmanah, Kusuma J., Duminil Jérôme, Sobir, Poerwanto R. (2023). Dataset from de novo transcriptome assembly of Myristica fatua leaves using MinION nanopore sequencer. Data in Brief, 46, p. 108838 [6 p.]. ISSN 2352-3409.
Titre du document
Dataset from de novo transcriptome assembly of Myristica fatua leaves using MinION nanopore sequencer
Matra D. D., Adrian M., Karmanah, Kusuma J., Duminil Jérôme, Sobir, Poerwanto R.
Source
Data in Brief, 2023,
46, p. 108838 [6 p.] ISSN 2352-3409
Myristica fatua is a tropical fruit tree species originating from Indonesia. Very few genomic resources are available for the species. We developed a full-length transcriptome assembly using long-read sequencing (MinION Nanopore technology) and produced 4.3 million reads (3.5 G of bases). The assem-bled full-length transcript was constructed using the RAT-TLE program and assembled 21,098 transcripts. The transcript ranged from 201 - 14,174 bp, and N50 was 2,017 bp. The transcripts were annotated with the UNIPROT database us-ing BlastX. The functional annotation was performed using Blast2go software. The 8,445 microsatellite motif-containing contigs were identified. The raw reads are deposited in the ENA (European Nucleotide Archive) with ENA experiment ac-cession number ERX6798613.
Plan de classement
Sciences fondamentales / Techniques d'analyse et de recherche [020]
;
Sciences du monde végétal [076]
