%0 Journal Article
%9 ACL : Articles dans des revues avec comité de lecture répertoriées par l'AERES
%A Matra, D. D.
%A Adrian, M.
%A Karmanah,
%A Kusuma, J.
%A Duminil, Jérôme
%A Sobir,
%A Poerwanto, R.
%T Dataset from de novo transcriptome assembly of Myristica fatua leaves using MinION nanopore sequencer
%D 2023
%L fdi:010086900
%G ENG
%J Data in Brief
%@ 2352-3409
%K Conservation ; Genetic diversity ; Long-reads sequencing ; Spices ; Full-length transcript
%K INDONESIE
%M ISI:000918879700001
%P 108838 [6 ]
%R 10.1016/j.dib.2022.108838
%U https://www.documentation.ird.fr/hor/fdi:010086900
%> https://horizon.documentation.ird.fr/exl-doc/pleins_textes/2023-03/010086900.pdf
%V 46
%W Horizon (IRD)
%X Myristica fatua is a tropical fruit tree species originating from Indonesia. Very few genomic resources are available for the species. We developed a full-length transcriptome assembly using long-read sequencing (MinION Nanopore technology) and produced 4.3 million reads (3.5 G of bases). The assem-bled full-length transcript was constructed using the RAT-TLE program and assembled 21,098 transcripts. The transcript ranged from 201 - 14,174 bp, and N50 was 2,017 bp. The transcripts were annotated with the UNIPROT database us-ing BlastX. The functional annotation was performed using Blast2go software. The 8,445 microsatellite motif-containing contigs were identified. The raw reads are deposited in the ENA (European Nucleotide Archive) with ENA experiment ac-cession number ERX6798613.
%$ 076 ; 020