Dereeper Alexis auteur aut IRD Bocs S. auteur aut IRD Rouard M. auteur aut IRD Guignon V. auteur aut IRD Ravel Sébastien auteur aut IRD Dubreuil Tranchant Christine auteur aut IRD Poncet Valérie auteur aut IRD Garsmeur O. auteur aut IRD Lashermes Philippe auteur aut IRD Droc G. auteur aut IRD text journalArticle eng text/pdf born digital access The whole genome sequence of Coffea canephora, the perennial diploid species known as Robusta, has been recently released. In the context of the C. canephora genome sequencing project and to support post-genomics efforts, we developed the Coffee Genome Hub ( ext-link-type="uri" xlink:href="http://coffee-genome.org/" xlink:type="simple">http://coffee-genome.org/), an integrative genome information system that allows centralized access to genomics and genetics data and analysis tools to facilitate translational and applied research in coffee. We provide the complete genome sequence of C. canephora along with gene structure, gene product information, metabolism, gene families, transcriptomics, syntenic blocks, genetic markers and genetic maps. The hub relies on generic software (e.g. GMOD tools) for easy querying, visualizing and downloading research data. It includes a Genome Browser enhanced by a Community Annotation System, enabling the improvement of automatic gene annotation through an annotation editor. In addition, the hub aims at developing interoperability among other existing South Green tools managing coffee data (phylogenomics resources, SNPs) and/or supporting data analyses with the Galaxy workflow manager. specialized 076 122 43 D1 D1028-D1035 2015 0305-1048 https://www.documentation.ird.fr/hor/fdi:010064052 10.1093/nar/gku1108 0305-1048 [F B010064052] https://www.documentation.ird.fr/hor/fdi:010064052 https://www.documentation.ird.fr/intranet/publi/2015/04/010064052.pdf Accès réservé (Intranet de l'IRD) IRD - Base Horizon / Pleins textes 2015-05-04 2021-05-19 fdi:010064052 fre