@article{fdi:010064052, title = {{T}he coffee genome hub : a resource for coffee genomes}, author = {{D}ereeper, {A}lexis and {B}ocs, {S}. and {R}ouard, {M}. and {G}uignon, {V}. and {R}avel, {S}{\'e}bastien and {D}ubreuil {T}ranchant, {C}hristine and {P}oncet, {V}al{\'e}rie and {G}arsmeur, {O}. and {L}ashermes, {P}hilippe and {D}roc, {G}.}, editor = {}, language = {{ENG}}, abstract = {{T}he whole genome sequence of {C}offea canephora, the perennial diploid species known as {R}obusta, has been recently released. {I}n the context of the {C}. canephora genome sequencing project and to support post-genomics efforts, we developed the {C}offee {G}enome {H}ub ( ext-link-type="uri" xlink:href="http://coffee-genome.org/" xlink:type="simple">http://coffee-genome.org/), an integrative genome information system that allows centralized access to genomics and genetics data and analysis tools to facilitate translational and applied research in coffee. {W}e provide the complete genome sequence of {C}. canephora along with gene structure, gene product information, metabolism, gene families, transcriptomics, syntenic blocks, genetic markers and genetic maps. {T}he hub relies on generic software (e.g. {GMOD} tools) for easy querying, visualizing and downloading research data. {I}t includes a {G}enome {B}rowser enhanced by a {C}ommunity {A}nnotation {S}ystem, enabling the improvement of automatic gene annotation through an annotation editor. {I}n addition, the hub aims at developing interoperability among other existing {S}outh {G}reen tools managing coffee data (phylogenomics resources, {SNP}s) and/or supporting data analyses with the {G}alaxy workflow manager.}, keywords = {}, booktitle = {}, journal = {{N}ucleic {A}cids {R}esearch}, volume = {43}, numero = {{D}1}, pages = {{D}1028--{D}1035}, ISSN = {0305-1048}, year = {2015}, DOI = {10.1093/nar/gku1108}, URL = {https://www.documentation.ird.fr/hor/fdi:010064052}, }