Varshney R. K., Thudi M., Roorkiwal M., He W. M., Upadhyaya H. D., Yang W., Bajaj P., Cubry Philippe, Rathore A., Jian J. B., Doddamani D., Khan A. W., Garg V., Chitikineni A., Xu D. W., Gaur P. M., Singh N. P., Chaturvedi S. K., Nadigatla Gvpr, Krishnamurthy L., Dixit G. P., Fikre A., Kimurto P. K., Sreeman S. M., Bharadwaj C., Tripathi S., Wang J., Lee S. H., Edwards D., Polavarapu K. K. B., Penmetsa R. V., Crossa J., Nguyen H. T., Siddique K. H. M., Colmer T. D., Sutton T., von Wettberg E., Vigouroux Yves, Xu X., Liu X. (2019). Resequencing of 429 chickpea accessions from 45 countries provides insights into genome diversity, domestication and agronomic traits. Nature Genetics, 51 (5), p. 857-864. ISSN 1061-4036.
Titre du document
Resequencing of 429 chickpea accessions from 45 countries provides insights into genome diversity, domestication and agronomic traits
Année de publication
2019
Auteurs
Varshney R. K., Thudi M., Roorkiwal M., He W. M., Upadhyaya H. D., Yang W., Bajaj P., Cubry Philippe, Rathore A., Jian J. B., Doddamani D., Khan A. W., Garg V., Chitikineni A., Xu D. W., Gaur P. M., Singh N. P., Chaturvedi S. K., Nadigatla Gvpr, Krishnamurthy L., Dixit G. P., Fikre A., Kimurto P. K., Sreeman S. M., Bharadwaj C., Tripathi S., Wang J., Lee S. H., Edwards D., Polavarapu K. K. B., Penmetsa R. V., Crossa J., Nguyen H. T., Siddique K. H. M., Colmer T. D., Sutton T., von Wettberg E., Vigouroux Yves, Xu X., Liu X.
Source
Nature Genetics, 2019,
51 (5), p. 857-864 ISSN 1061-4036
We report a map of 4.97 million single-nucleotide polymorphisms of the chickpea from whole-genome resequencing of 429 lines sampled from 45 countries. We identified 122 candidate regions with 204 genes under selection during chickpea breeding. Our data suggest the Eastern Mediterranean as the primary center of origin and migration route of chickpea from the Mediterranean/Fertile Crescent to Central Asia, and probably in parallel from Central Asia to East Africa (Ethiopia) and South Asia (India). Genome-wide association studies identified 262 markers and several candidate genes for 13 traits. Our study establishes a foundation for large-scale characterization of germplasm and population genomics, and a resource for trait dissection, accelerating genetic gains in future chickpea breeding.
Plan de classement
Sciences du monde végétal [076]
Description Géographique
ASIE ; AFRIQUE DE L'EST ; AMERIQUE ; ZONE MEDITERRANEENNE
Localisation
Fonds IRD [F B010075648]
Identifiant IRD
fdi:010075648
