Romain Guyot dans la base Horizon  


Articles référencés dans le Web of Science

  1. Acosta M. C. B., Montufar R., Guyot Romain, Mariac Cédric, Tranbarger Timothy, Restrepo S., Couvreur Thomas. (2022). Bactris gasipaes Kunth var. gasipaes complete plastome and phylogenetic analysis. Mitochondrial DNA Part B : Resources, 7 (8), p. 1540-1544.
    Identifiant IRD :  fdi:010086003

  2. Orozco-Arias S., Candamil M. S., Jaimes P. A., Cristancho M., Tabares-Soto R., Guyot Romain. (2022). Composition and diversity of LTR retrotransposons in the coffee leaf rust genome (Hemileia vastatrix). Agronomy, 12 (7), p. 1665 [17 p.].
    Identifiant IRD :  fdi:010085895

  3. Orozco-Arias S., Candamil-Cortes M. S., Jaimes P. A., Valencia-Castrillon E., Tabares-Soto R., Isaza G., Guyot Romain. (2022). Automatic curation of LTR retrotransposon libraries from plant genomes through machine learning. Journal of Integrative Bioinformatics, [Early access], p. jib-2021-0036 [ p.].
    Identifiant IRD :  fdi:010085408

  4. Duitama J., Bartley L. E., Guyot Romain, Sharma R. (2022). Grass genome evolution and domestication [Editorial]. Frontiers in Plant Science, 13, p. 866201 [2 p.]. ISSN 1664-462X.
    Identifiant IRD :  fdi:010085222

  5. Cintra L. A., de Souza T. B., Parteka L. M., Barreto L. M., Pereira L. F. P., Gaeta M. L., Guyot Romain, Vanzela A. L. L. (2022). An 82 bp tandem repeat family typical of 3 ' non-coding end of Gypsy/TAT LTR retrotransposons is conserved in Coffea spp. pericentromeres. Genome, 65 (3), p. 137-151. ISSN 0831-2796.
    Identifiant IRD :  fdi:010084504

  6. Hu G. B., Feng J. T., Xiang X., Wang J. B., Salojarvi J., Liu C. M., Wu Z. X., Zhang J. S., Liang X. M., Jiang Z. D., Liu W., Ou L. X., Li J. W., Fan G. Y., Mai Y. X., Chen C. J., Zhang X. T., Zheng J. K., Zhang Y. Q., Peng H. X., Yao L. X., Wai C. M., Luo X. P., Fu J. X., Tang H. B., Lan T. Y., Lai B. A., Sun J. H., Wei Y. Z., Li H. L., Chen J. Z., Huang X. M., Yan Q., Liu X., McHale L. K., Rolling L., Guyot Romain, Sankoff D., Zheng C. F., Albert V. A., Ming R. A., Chen H. B., Xia R., Li J. G. (2022). Two divergent haplotypes from a highly heterozygous lychee genome suggest independent domestication events for early and late-maturing cultivars. Nature Genetics, 54, p. 73-83 + [18 p.]. ISSN 1061-4036.
    Identifiant IRD :  fdi:010083934


Articles référencés dans le Web of Science

  1. Orozco-Arias S., Candamil-Cortes M. S., Valencia-Castrillon E., Jaimes P. A., Orozco N. T., Arias-Mendoza M., Tabares-Soto R., Guyot Romain, Isaza G., IEEE. (2021). SENMAP : a convolutional neural network architecture for curation of LTR-RT libraries from plant genomes. 2021 IEEE 2nd International Congress of Biomedical Engineering and Bioengineering, p. 341660 [4 p.].
    Identifiant IRD :  fdi:010086138

  2. Ayala-Usma D. A., Cardenas M., Guyot Romain, De Mares M. C., Bernal A., Munoz A. R., Restrepo S. (2021). A whole genome duplication drives the genome evolution of Phytophthora betacei, a closely related species to Phytophthora infestans. BMC Genomics, 22 (1), p. 795 [21 p.]. ISSN 1471-2164.
    Identifiant IRD :  fdi:010083301

  3. Orozco-Arias S., Candamil-Cortes M. S., Jaimes P. A., Pina J. S., Tabares-Soto R., Guyot Romain, Isaza G. (2021). K-mer-based machine learning method to classify LTR-retrotransposons in plant genomes. PeerJ, 9, p. e11456 [20 p.]. ISSN 2167-8359.
    Identifiant IRD :  fdi:010081522

  4. Raharimalala N., Rombauts S., McCarthy A., Garavito A., Orozco-Arias S., Bellanger L., Morales-Correa A. Y., Froger S., Michaux S., Berry V., Metairon S., Fournier C., Lepelley M., Mueller L., Couturon Emmanuel, Hamon Perla, Rakotomalala J. J., Descombes P., Guyot Romain, Crouzillat D. (2021). The absence of the caffeine synthase gene is involved in the naturally decaffeinated status of Coffea humblotiana, a wild species from Comoro archipelago. Scientific Reports - Nature, 11 (1), p. 8119 [14 p.]. ISSN 2045-2322.
    Identifiant IRD :  fdi:010081437

  5. Orozco-Arias S., Jaimes P. A., Candamil M. S., Jimenez-Varon C. F., Tabares-Soto R., Isaza G., Guyot Romain. (2021). InpactorDB : a classified lineage-level plant LTR retrotransposon reference library for free-alignment methods based on machine learning. Genes, 12 (2), p. 190 [17 p.].
    Identifiant IRD :  fdi:010081058


Articles référencés dans le Web of Science

  1. Guyot Romain, Hamon Perla, Couturon Emmanuel, Raharimalala N., Rakotomalala J. J., Lakkanna S., Sabatier S., Affouard A., Bonnet P. (2020). WCSdb : a database of wild Coffea species [Data paper]. Database, p. baaa069 [6 p.]. ISSN 1758-0463.
    Identifiant IRD :  fdi:010080466

  2. Rimlinger A., Raharimalala N., Letort V., Rakotomalala J. J., Crouzillat D., Guyot Romain, Hamon Perla, Sabatier S. (2020). Phenotypic diversity assessment within a major ex situ collection of wild endemic coffees in Madagascar. Annals of Botany, 126 (5), p. 849-863. ISSN 0305-7364.
    Identifiant IRD :  fdi:010080405

  3. Orozco-Arias S., Tobon-Orozco N., Pina J. S., Jimenez-Varon C. F., Tabares-Soto R., Guyot Romain. (2020). TIP_finder : an HPC software to detect transposable element insertion polymorphisms in large genomic datasets. Biology, 9 (9), p. 281 [17 p.].
    Identifiant IRD :  fdi:010079857

  4. Lemos S. M. C., Foncatti L. F. C., Guyot Romain, Paschoal A. R., Domingues D. S. (2020). Genome-wide screening and characterization of non-coding RNAs in Coffea canephora. Non-Coding RNA, 6 (3), p. 39 [15p.].
    Identifiant IRD :  fdi:010079866

  5. Konan J. A., Guyot Romain, Koffi K. K., Vroh-Bi I., Zoro A. I. B. (2020). Molecular confirmation of varietal status in bottle gourd (Lagenaria siceraria) using genotyping-by-sequencing. Genome, 63 (11), p. 535-545. ISSN 0831-2796.
    Identifiant IRD :  fdi:010079962

  6. Charr J. C., Garavito A., Guyeux C., Crouzillat D., Descombes P., Fournier C., Ly S. N., Raharimalala E. N., Rakotomalala J. J., Stoffelen P., Janssens S., Hamon Perla, Guyot Romain. (2020). Complex evolutionary history of coffees revealed by full plastid genomes and 28,800 nuclear SNP analyses, with particular emphasis on Coffea canephora (Robusta coffee). Molecular Phylogenetics and Evolution, 151, p. 106906 [13 p.]. ISSN 1055-7903.
    Identifiant IRD :  fdi:010079508

  7. Wu S. Y., Guyot Romain, Bocs S., Droc G., Oktavia F., Hu S. N., Tang C. R., Montoro P., Leclercq J. (2020). Structural and functional annotation of transposable elements revealed a potential regulation of genes involved in rubber biosynthesis by TE-derived siRNA interference in Hevea brasiliensis. International Journal of Molecular Sciences, 21 (12), 4220 [21 p.].
    Identifiant IRD :  fdi:010079380

  8. Orozco-Arias S., Pina J. S., Tabares-Soto R., Castillo-Ossa L. F., Guyot Romain, Isaza G. (2020). Measuring performance metrics of machine learning algorithms for detecting and classifying transposable elements. Processes, 8 (6), p. art. 638 [18p.].
    Identifiant IRD :  fdi:010079425

  9. Hufnagel B., Marques A., Soriano A., Marques L., Divol F., Doumas P., Sallet E., Mancinotti D., Carrere S., Marande W., Arribat S., Keller J., Huneau C., Blein T., Aime D., Laguerre M., Taylor J., Schubert V., Nelson M., Geu-Flores F., Crespi M., Gallardo K., Delaux P. M., Salse J., Berges H., Guyot Romain, Gouzy J., Peret B. (2020). High-quality genome sequence of white lupin provides insight into soil exploration and seed quality. Nature Communications, 11 (1), p. art. 492 [12 p.]. ISSN 2041-1723.
    Identifiant IRD :  fdi:010079158

  10. Ly S. N., Garavito A., De Block P., Asselman P., Guyeux C., Charr J. C., Janssens S., Mouly A., Hamon Perla, Guyot Romain. (2020). Chloroplast genomes of Rubiaceae : comparative genomics and molecular phylogeny in subfamily Ixoroideae. PLoS One, 15 (4), p. art. e0232295 [21 p.]. ISSN 1932-6203.
    Identifiant IRD :  fdi:010078132


Articles référencés dans le Web of Science

  1. Orozco-Arias S., Isaza G., Guyot Romain, Tabares-Soto R. (2019). A systematic review of the application of machine learning in the detection and classification of transposable elements. PeerJ, 7, p. e8311 [29 p.]. ISSN 2167-8359.
    Identifiant IRD :  fdi:010077475

  2. Orozco-Arias S., Isaza G., Guyot Romain. (2019). Retrotransposons in plant genomes : structure, identification, and classification through bioinformatics and machine learning. International Journal of Molecular Sciences, 20 (15), p. art. 3837 [31 p.]. ISSN 1661-6596.
    Identifiant IRD :  fdi:010076634

  3. Guyeux C., Charr J. C., Tran H. T. M., Furtado A., Henry R. J., Crouzillat D., Guyot Romain, Hamon Perla. (2019). Evaluation of chloroplast genome annotation tools and application to analysis of the evolution of coffee species. PLOS One, 14 (6), p. e0216347 [20 p.]. ISSN 1932-6203.
    Identifiant IRD :  fdi:010076131

  4. dos Santos T. B., Soares J. D. M., Lima J. E., Silva J. C., Ivamoto S. T., Baba V. Y., Souza S. G. H., Lorenzetti A. P. R., Paschoal A. R., Meda A. R., Nishiyama M. Y., de Oliveira U. C., Mokochinski J. B., Guyot Romain, Junqueira-de-Azevedo I. L. M., Figueira A. V. O., Mazzafera P., Junior O. R., Vieira L. G. E., Pereira L. F. P., Domingues D. S. (2019). An integrated analysis of mRNA and sRNA transcriptional profiles in Coffea arabica L. roots: insights on nitrogen starvation responses. Functional and Integrative Genomics, 19 (1), p. 151-169. ISSN 1438-793X.
    Identifiant IRD :  fdi:010074847


Articles référencés dans le Web of Science

  1. Breitler J. C., Dechamp E., Campa Claudine, Rodrigues L. A. Z., Guyot Romain, Marraccini P., Etienne H. (2018). CRISPR/Cas9-mediated efficient targeted mutagenesis has the potential to accelerate the domestication of Coffea canephora. Plant Cell Tissue and Organ Culture, 134 (3), p. 383-394. ISSN 0167-6857.
    Identifiant IRD :  fdi:010073769

  2. de Castro Nunes R., Orozco-Arias S., Crouzillat D., Mueller L. A., Strickler S. R., Descombes P., Fournier C., Moine D., Kochko Alexandre de, Yuyama P. M., Vanzela A. L. L., Guyot Romain. (2018). Structure and distribution of centromeric retrotransposons at diploid and allotetraploid Coffea centromeric and pericentromeric regions. Frontiers in Plant Science, 9, p. art. 175 [14p.]. ISSN 1664-462X.
    Identifiant IRD :  fdi:010072372

  3. Sant'Ana G. C., Pereira L. F. P., Pot D., Ivamoto S. T., Domingues D. S., Ferreira R. V., Pagiatto N. F., da Silva B. S. R., Nogueira L. M., Kitzberger C. S. G., Scholz M. B. S., de Oliveira F. F., Sera G. H., Padilha L., Labouisse J. P., Guyot Romain, Charmetant P., Leroy T. (2018). Genome-wide association study reveals candidate genes influencing lipids and diterpenes contents in Coffea arabica L. Scientific Reports - Nature, 8, p. art. 465 [ 12 p.]. ISSN 2045-2322.
    Identifiant IRD :  fdi:010072002



  1. Hamon Perla, Grover C.E., Davis A.P., Rakotomalala J.J., Raharimalala N.E., Albert V.A., Sreenath H.L., Mitchell S.E., Couturon Emmanuel, Hamon Serge, Kochko Alexandre de, Crouzillat D., Rigoreau M., Sumirat U., Akaffou S., Guyot Romain. (2017). Genotyping-by-sequencing provides the first well-resolved phylogeny for coffee (Coffea) and insights into the evolution of caffeine content in its species : GBS coffee phylogeny and the evolution of caffeine content. Molecular Phylogenetics and Evolution, 109, p. 351-361. ISSN 1055-7903.
    Identifiant IRD :  fdi:010069165

Articles référencés dans le Web of Science

  1. Qin G. H., Xu C. Y., Ming R., Tang H. B., Guyot Romain, Kramer E. M., Hu Y. D., Yi X. K., Qi Y. J., Xu X. Y., Gao Z. H., Pan H. F., Jian J. B., Tian Y. P., Yue Z., Xu Y. L. (2017). The pomegranate (Punica granatum L.) genome and the genomics of punicalagin biosynthesis. Plant Journal, 91 (6), p. 1108-1128. ISSN 0960-7412.
    Identifiant IRD :  fdi:010070961

  2. Dupeyron M., de Souza R. F., Hamon Perla, Kochko Alexandre de, Crouzillat D., Couturon Emmanuel, Domingues D. S., Guyot Romain. (2017). Distribution of Divo in Coffea genomes, a poorly described family of angiosperm LTR-Retrotransposons. Molecular Genetics and Genomics, 292 (4), p. 741-754. ISSN 1617-4615.
    Identifiant IRD :  fdi:010070381

Chapitres ou parties d'ouvrages

  1. Kochko Alexandre de, Hamon Serge, Guyot Romain, Couturon Emmanuel, Poncet Valérie, Dubreuil Tranchant Christine, Crouzillat D., Rigoreau M., Hamon Perla. (2017). Omics applications : Coffee. In : Chowdappa P. (ed.), Karun A. (ed.), Rajesh M.K. (ed.), Ramesh S.V. (ed.). Biotechnology of plantation crops. New Delhi : Daya Publishing House, p. 589-606. ISBN 9789386071729.
    Identifiant IRD :  fdi:010069162



  1. Etienne H., Bertrand B., Dechamp E., Maurel P., Georget F., Guyot Romain, Breitler J.C. (2016). Are genetic and epigenetic instabilities of plant embryogenic cells a fatality ? : the experience of coffee somatic embryogenesis. Human Genetics and Embryology, 6 (1), 5 p. ISSN 2161-0436.
    Identifiant IRD :  fdi:010084065

Articles référencés dans le Web of Science

  1. Ming R., Wai C. M., Guyot Romain. (2016). Pineapple genome : a reference for monocots and CAM photosynthesis. Trends in Genetics, 32 (11), p. 690-696. ISSN 0168-9525.
    Identifiant IRD :  fdi:010068676

  2. Garavito A., Montagnon C., Guyot Romain, Bertrand B. (2016). Identification by the DArTseq method of the genetic origin of the Coffea canephora cultivated in Vietnam and Mexico. BMC Plant Biology, 16, 242 [12 p.]. ISSN 1471-2229.
    Identifiant IRD :  fdi:010068327

  3. Rocha D. M., Marques A., Andrade Cgtj, Guyot Romain, Chaluvadi S. R., Pedrosa-Harand A., Houben A., Bennetzen J. L., Vanzela A. L. L. (2016). Developmental programmed cell death during asymmetric microsporogenesis in holocentric species of Rhynchospora (Cyperaceae). Journal of Experimental Botany, 67 (18), p. 5391-5401. ISSN 0022-0957.
    Identifiant IRD :  fdi:010068282

  4. Guyot Romain, Darre T., Dupeyron M., Kochko Alexandre de, Hamon Serge, Couturon Emmanuel, Crouzillat D., Rigoreau M., Rakotomalala J. J., Raharimalala N. E., Akaffou S. D., Hamon Perla. (2016). Partial sequencing reveals the transposable element composition of Coffea genomes and provides evidence for distinct evolutionary stories. Molecular Genetics and Genomics, 291 (5), p. 1979-1990. ISSN 1617-4615.
    Identifiant IRD :  fdi:010068137

  5. Roncal J., Guyot Romain, Hamon Perla, Crouzillat D., Rigoreau M., Konan O. N., Rakotomalala J. J., Nowak M. D., Davis A. P., Kochko Alexandre de. (2016). Active transposable elements recover species boundaries and geographic structure in Madagascan coffee species. Molecular Genetics and Genomics, 291 (1), p. 155-168. ISSN 1617-4615.
    Identifiant IRD :  fdi:010066167


  1. Couturon Emmanuel, Raharimalala N.E., Rakotomalala J.J., Hamon Serge, Kochko Alexandre de, Guyot Romain, Hamon Perla. (2016). Caféiers sauvages : un trésor en péril au coeur des forêts tropicales ! = Wild coffee-trees : a threatened treasure in the heart of tropical forests !. Montpellier : Association Biodiversité, Ecovalorisation et Caféiers, 117 p. ISBN 978-2-7466-9109-4.
    Identifiant IRD :  fdi:010067198


Articles référencés dans le Web of Science

  1. Ming R., VanBuren R., Wai C. M., Tang H. B., Schatz M. C., Bowers J. E., Lyons E., Wang M. L., Chen J., Biggers E., Zhang J. S., Huang L. X., Zhang L. M., Miao W. J., Zhang J., Ye Z. Y., Miao C. Y., Lin Z. C., Wang H., Zhou H. Y., Yim W. C., Priest H. D., Zheng C. F., Woodhouse M., Edger P. P., Guyot Romain, Guo H. B., Guo H., Zheng G. Y., Singh R., Sharma A., Min X. J., Zheng Y., Lee H., Gurtowski J., Sedlazeck F. J., Harkess A., McKain M. R., Liao Z. Y., Fang J. P., Liu J., Zhang X. D., Zhang Q., Hu W. C., Qin Y., Wang K., Chen L. Y., Shirley N., Lin Y. R., Liu L. Y., Hernandez A. G., Wright C. L., Bulone V., Tuskan G. A., Heath K., Zee F., Moore P. H., Sunkar R., Leebens-Mack J. H., Mockler T., Bennetzen J. L., Freeling M., Sankoff D., Paterson A. H., Zhu X. G., Yang X. H., Smith J. A. C., Cushman J. C., Paull R. E., Yu Q. Y. (2015). The pineapple genome and the evolution of CAM photosynthesis. Nature Genetics, 47 (12), p. 1435-1442 + 3 p. d'annexes : online methods. ISSN 1061-4036.
    Identifiant IRD :  fdi:010065534

  2. Santos F. C., Guyot Romain, do Valle C. B., Chiari L., Techio V. H., Heslop-Harrison P., Vanzela A. L. L. (2015). Chromosomal distribution and evolution of abundant retrotransposons in plants : gypsy elements in diploid and polyploid Brachiaria forage grasses. Chromosome Research, 23 (3), p. 571-582. ISSN 0967-3849.
    Identifiant IRD :  fdi:010065489

  3. Beulé T., Agbessi M. D. T., Dussert Stéphane, Jaligot E., Guyot Romain. (2015). Genome-wide analysis of LTR-retrotransposons in oil palm. Bmc Genomics, 16, 795. ISSN 1471-2164.
    Identifiant IRD :  fdi:010065385

  4. Landey R. B., Cenci Alberto, Guyot Romain, Bertrand B., Georget F., Dechamp E., Herrera J. C., Aribi Jamel, Lashermes Philippe, Etienne H. (2015). Assessment of genetic and epigenetic changes during cell culture ageing and relations with somaclonal variation in Coffea arabica. Plant Cell Tissue and Organ Culture, 122 (3), p. 517-531. ISSN 0167-6857.
    Identifiant IRD :  fdi:010064917

  5. Silva Dias Elaine, Hatt Clémence, Hamon Perla, Hamon Serge, Rigoreau M., Crouzillat D., Carareto C.M.A., Kochko Alexandre de, Guyot Romain. (2015). Large distribution and high sequence identity of a Copia‑type retrotransposon in angiosperm families. Plant Molecular Biology, 89 (1-2), p. 83-97. ISSN 0167-4412.
    Identifiant IRD :  fdi:010064998

  6. VanBuren R., Zeng F. C., Chen C. X., Zhang J. S., Wai C. M., Han J., Aryal R., Gschwend A. R., Wang J. P., Na J. K., Huang L. X., Zhang L. M., Miao W. J., Gou J. Q., Arro J., Guyot Romain, Moore R. C., Wang M. L., Zee F., Charlesworth D., Moore P. H., Yu Q. Y., Ming R. (2015). Origin and domestication of papaya Y-h chromosome. Genome Research, 25 (4), p. 524-533. ISSN 1088-9051.
    Identifiant IRD :  fdi:010064149

  7. Chaparro C., Gayraud T., Souza R.F. de, Domingues D.S., Akaffou S., Laforga Vanzela A.L., Kochko Alexandre de, Rigoreau M., Crouzillat D., Hamon Serge, Hamon Perla, Guyot Romain. (2015). Terminal-repeat retrotransposons with GAG domain in plant genomes : a new testimony on the complex world of transposable elements. Genome Biology and Evolution, 7 (2), p. 493-504. ISSN 1759-6653.
    Identifiant IRD :  fdi:010063587

Chapitres ou parties d'ouvrages

  1. Mueller L., Strickler S., Domingues D., Pereira L., Andrade A., Marraccini P., Ming R., Wai J., Albert V., Giuliano G., Fiore A., Pietrella M., Aprea G., Descombes P., Moine D., Guyot Romain, Poncet Valérie, Hamon Perla, Hamon Serge, Dubreuil Tranchant Christine, Couturon Emmanuel, Kochko Alexandre de, Lepelley M., Bellanger L., Merot-L'Anthoene V., Vandecasteele C., Rigoreau M., Crouzillat D., Paschoal Rossi A., Sankoff D., Zheng C., Kuhn G., Korlach J., Chin J. (2015). Towards a better understanding of the Coffea arabica genome structure. In : Proceedings of the 25th international conference on coffee science. ASIC, p 42-45. International Conference on Coffe Science, 25., Armenia (COL), 2015/09/08-13. ISBN 978-2-900212-24-0.
    Identifiant IRD :  fdi:010065067

  2. Hamon Perla, Hamon Serge, Razafinarivo Norosoa J., Guyot Romain, Siljak-Yakovlev S., Couturon Emmanuel, Crouzillat D., Rigoreau M., Akaffou S., Rakotomalala J.J., Kochko Alexandre de. (2015). Coffea genome organization and evolution. In : Preedy V. (ed.). Coffee in health and disease prevention. San Diego : Academic Press, p. 29-37. ISBN 978-0-12-409517-5.
    Identifiant IRD :  fdi:010063204

  3. Hamon Perla, Rakotomalala J.J., Akaffou S., Razafinarivo Norosoa J., Couturon Emmanuel, Guyot Romain, Crouzillat D., Hamon Serge, Kochko Alexandre de. (2015). Caffeine-free species in the genus Coffea. In : Preedy V. (ed.). Coffee in health and disease prevention. San Diego : Academic Press, p. 39-44. ISBN 978-0-12-409517-5.
    Identifiant IRD :  fdi:010063205


Articles référencés dans le Web of Science

  1. Denoeud F., Carretero-Paulet L., Dereeper Alexis, Droc G., Guyot Romain, Pietrella M., Zheng C. F., Alberti A., Anthony François, Aprea G., Aury J. M., Bento P., Bernard M., Bocs S., Campa Claudine, Cenci Alberto, Combes Marie-Christine, Crouzillat D., Da Silva C., Daddiego L., De Bellis F., Dussert Stéphane, Garsmeur O., Gayraud T., Guignon V., Jahn K., Jamilloux V., Joët Thierry, Labadie K., Lan T. Y., Leclercq J., Lepelley M., Leroy T., Li L. T., Librado P., Lopez L., Munoz A., Noel B., Pallavicini A., Perrotta G., Poncet Valérie, Pot D., Priyono, Rigoreau M., Rouard M., Rozas J., Dubreuil Tranchant Christine, Van Buren R., Zhang Q., Andrade A. C., Argout X., Bertrand B., Kochko Alexandre de, Graziosi G., Henry R. J., Jayarama, Ming R., Nagai C., Rounsley S., Sankoff D., Giuliano G., Albert V. A., Wincker P., Lashermes Philippe. (2014). The coffee genome provides insight into the convergent evolution of caffeine biosynthesis. Science, 345 (6201), p. 1181-1184. ISSN 0036-8075.
    Identifiant IRD :  fdi:010062514


Articles référencés dans le Web of Science

  1. Dereeper Alexis, Guyot Romain, Dubreuil Tranchant Christine, Anthony François, Argout X., de Bellis F., Combes Marie-Christine, Gavory F., Kochko Alexandre de, Kudrna D., Leroy T., Poulain J., Rondeau M., Song X., Wing R., Lashermes Philippe. (2013). BAC-end sequences analysis provides first insights into coffee (Coffea canephora P.) genome composition and evolution. Plant Molecular Biology, 83 (3), p. 177-189. ISSN 0167-4412.
    Identifiant IRD :  fdi:010061149

  2. Razafinarivo Norosoa, Guyot Romain, Davis A.P., Couturon Emmanuel, Hamon Serge, Crouzillat D., Rigoreau M., Dubreuil Tranchant Christine, Poncet Valérie, Kochko Alexandre de, Rakotomalala J. J., Hamon Perla. (2013). Genetic structure and diversity of coffee (Coffea) across Africa and the Indian Ocean islands revealed using microsatellites [plus supplementary data]. Annals of Botany, 111 (2), p. 229-248 [+ supplementary data : 5 p.]. ISSN 0305-7364.
    Identifiant IRD :  fdi:010058979

Chapitres ou parties d'ouvrages

  1. Lorieux Mathias, Garavito Andrea, Bouniol Julie, Gutierrez A., Ndjiondjop M.N., Guyot Romain, Pompilio Martinez C., Tohme J., Ghesquière Alain. (2013). Unlocking the Oryza glaberrima treasure for rice breeding in Africa. In : Wopereis M.C.S. (ed.), Johnson D.E. (ed.), Ahmadi N. (ed.), Tollens E. (ed.), Jalloh A. (ed.). Realizing Africa's rice promise. Wallingford : CABI, p. 130-143. Realizing Africa's Rice Promise, 3., Yaoundé (CMR), 2013/10.
    Identifiant IRD :  fdi:010061552

  2. Razafinarivo Norosoa Josiane, Brown S., Bourge M., Davis A.P., Hamon Serge, Couturon Emmanuel, Kochko Alexandre de, Dubreuil Tranchant Christine, Guyot Romain, Poncet Valérie, Crouzillat D., Rigoreau M., Rakatomalala J.J., Hamon Perla. (2013). Coffea L. genome size and genetic diversity using nuclear microsatellite markers across Africa and the Indian Ocean Islands. In : Proceedings of the 24th international conference on coffee science. San José : ASIC, p. 569-575. International Conference on Coffee Science, 24., San José (CRI), 2012/11/11-16. ISBN 978-2-900212-23-3.
    Identifiant IRD :  fdi:010060131


Articles référencés dans le Web of Science

  1. Razafinarivo Norosoa, Rakotomalala J.J., Brown S.C., Bourge M., Hamon Serge, Kochko Alexandre de, Poncet Valérie, Dubreuil Tranchant Christine, Couturon Emmanuel, Guyot Romain, Hamon Perla. (2012). Geographical gradients in the genome size variation of wild coffee trees (Coffea) native to Africa and Indian Ocean islands. Tree Genetics and Genomes, 8 (6), p. 1345-1358. ISSN 1614-2942.
    Identifiant IRD :  fdi:010058168

  2. Guyot Romain, Lefebvre-Pautigny F., Dubreuil Tranchant Christine, Rigoreau M., Hamon Perla, Leroy T., Hamon Serge, Poncet Valérie, Crouzillat D., Kochko Alexandre de. (2012). Ancestral synteny shared between distantly-related plant species from the asterid (Coffea canephora and Solanum Sp.) and rosid (Vitis vinifera) clades. Bmc Genomics, 13, p. 103. ISSN 1471-2164.
    Identifiant IRD :  fdi:010055958

Colloques, congrès, séminaires

  1. Guyot Romain, Lefevre-Pautigny F., Tranchant Christine, Rigoreau M., Poncet Valérie, Hamon Perla, Leroy T., Hamon Serge, Crouzillat D., Kochko Alexandre de. (2012). Ancestral synteny is shared between distantly related plant species from the asterid and rosid clades. In : International conference on coffe science. Paris : ASIC, p. 527-532. International Conference on Coffe Science, 24., San José (Costa Rica), 2012/11/12-16.
    Identifiant IRD :  fdi:010059341



  1. Dubreuil Tranchant Christine, Guyot Romain, Guellim Amira, Duret Caroline, Mare Marion de la, Razafinarivo Norosoa, Poncet Valérie, Hamon Serge, Hamon Perla, Kochko Alexandre de. (2011). Site-specific insertion polymorphism of the MITE Alex-1 in the genus Coffea suggests interspecific gene flow. International Journal of Evolutionnary Biology, 2011 (ID 358412), 9 p.
    Identifiant IRD :  fdi:010052679

Articles référencés dans le Web of Science

  1. Yu Q.Y., Guyot Romain, Kochko Alexandre de, Byers A., Navajas-Perez R., Langston B.J., Dubreuil Tranchant Christine, Paterson A.H., Poncet Valérie, Nagai C., Ming R. (2011). Micro-collinearity and genome evolution in the vicinity of an ethylene receptor gene of cultivated diploid and allotetraploid coffee species (Coffea). Plant Journal, 67 (2), p. 305-317. ISSN 0960-7412.
    Identifiant IRD :  fdi:010053685

  2. Hamon Perla, Duroy Pierre-Olivier, Dubreuil Tranchant Christine, Mafra D'Almeida Costa Paulo, Duret Caroline, Razafinarivo Norosoa, Couturon Emmanuel, Hamon Serge, Kochko Alexandre de, Poncet Valérie, Guyot Romain. (2011). Two novel Ty1-copia retrotransposons isolated from coffee trees can effectively reveal evolutionary relationships in the Coffea genus (Rubiaceae). Molecular Genetics and Genomics, 285 (6), p. 447-460. ISSN 1617-4615.
    Identifiant IRD :  fdi:010053575

  3. Guyot Romain, Garavito Andrea, Gavory F., Samain S., Tohme J., Ghesquière Alain, Lorieux Mathias. (2011). Patterns of sequence divergence and evolution of the S-1 orthologous regions between Asian and African cultivated rice species. Plos One, 6 (3), p. e17726. ISSN 1932-6203.
    Identifiant IRD :  fdi:010053390


Articles référencés dans le Web of Science

  1. Garavito A., Guyot Romain, Lozano J., Gavory F., Samain S., Panaud O., Tohme J., Ghesquière Alain, Lorieux Mathias. (2010). A genetic model for the female sterility barrier between Asian and African cultivated rice species. Genetics, 185 (4), p. 1425-1440. ISSN 0016-6731.
    Identifiant IRD :  fdi:010084092

  2. Soto-Suarez Mauricio, Bernal D., Gonzalez Carolina, Szurek Boris, Guyot Romain, Tohme J., Verdier Valérie. (2010). In planta gene expression analysis of Xanthomonas oryzae pathovar oryzae, African strain MAI1. Bmc Microbiology, 10, p. 170. ISSN 1471-2180.
    Identifiant IRD :  fdi:010049656

  3. Kochko Alexandre de, Akaffou S., Andrade A.C., Campa Claudine, Crouzillat D., Guyot Romain, Hamon Perla, Ming Ray, Mueller L.A., Poncet Valérie, Tranchant Dubreuil Christine, Hamon Serge. (2010). Advances in Coffea genomics. In : Kader J.C. (ed.), Delseny M. (ed.). Advances in botanical research. Advances in Botanical Research, 53, p. 23-63. ISBN 978-0-12-380872-1. ISSN 0065-2296.
    Identifiant IRD :  fdi:010049775


Articles référencés dans le Web of Science

  1. Guyot Romain, De la Mare Marion, Viader Véronique, Hamon Perla, Coriton O., Bustamante Porras José, Poncet Valérie, Campa Claudine, Hamon Serge, Kochko Alexandre de. (2009). Microcollinearity in an ethylene receptor coding gene region of the Coffea canephora genome is extensively conserved with Vitis vinifera and other distant dicotyledonous sequenced genomes. Bmc Plant Biology, 9, 22. ISSN 1471-2229.
    Identifiant IRD :  fdi:010044336


Articles référencés dans le Web of Science

  1. Bourgis Fabienne, Guyot Romain, Gherbi Hassen, Tailliez E., Amabile Isabelle, Salse J., Lorieux Mathias, Delseny M., Ghesquiere Alain. (2008). Characterization of the major fragance gene from an aromatic japonica rice and analysis of its diversity in Asian cultivated rice. Theoretical and Applied Genetics, 117 (3), p. 353-368. ISSN 0040-5752.
    Identifiant IRD :  fdi:010042684


Articles référencés dans le Web of Science

  1. Chaparro C., Guyot Romain, Zuccolo A., Piegu B., Panaud O. (2007). RetrOryza: a database of the rice LTR-retrotransposons. Nucleic Acids Research, 35 (Database issue), p. D66-D70. ISSN 0305-1048.
    Identifiant IRD :  fdi:010037763


Articles référencés dans le Web of Science

  1. Piegu B., Guyot Romain, Picault N., Roulin A., Saniyal A., Kim H., Collura K., Brar D.S., Jackson S., Wing R.A., Panaud O. (2006). Doubling genome size without polyploidization : dynamics of retrotransposition-driven genomic expansions in Oryza australiensis, a wild relative of rice. Genome Research, 16 (10), p. 1262-1269. ISSN 1088-9051.
    Identifiant IRD :  fdi:010037666