@article{fdi:010092952,
  title = {{A}dvancing biomonitoring of e{DNA} studies with the {A}naconda {R} package : {I}ntegrating soil and {O}ne {H}ealth perspectives in the face of evolving traditional agriculture practices},
  author = {{S}tenger, {P}. {L}. and {L}{\'e}opold, {A}. and {D}inh, {K}. and {M}ournet, {P}. and {R}obert, {N}. and {D}rouin, {J}. and {W}amejonengo, {J}. and {R}usset, {S}. and {I}banez, {T}homas and {M}aggia, {L}. and {C}arriconde, {F}.},
  editor = {},
  language = {{ENG}},
  abstract = {{S}oil health and {O}ne {H}ealth are global concerns, necessitating the development of refined indicators for effective monitoring. {I}n response, we present the {A}naconda {R} {P}ackage, a novel tool designed to enhance the analysis of e{DNA} data for biomonitoring purposes. {E}mploying a combination of different approaches, this package allows for a comprehensive investigation of species abundance and community composition under diverse conditions. {T}his study applied the {A}naconda package to examine the impact of two types of duration fire-fallow cropping systems, using natural forests as a reference, on soil fungal and bacterial communities in {M}are {I}sland ({N}ew {C}aledonia). {C}ondition-specific taxa were identified, particularly pathogenic fungi and bacteria, demonstrating the importance of long-term fallowing efforts. {N}otably, this package also revealed the potential contributions of beneficial soil microbes, including saprophytes and plant-endophyte fungi, in suppressing soil-borne pathogens. {O}ver-represented microbial {ASV}s associated with both plant and animal pathogens, including those of potential concern for human health, were identified. {T}his underscores the importance of maintaining intrinsic balance for effective disease suppression. {I}mportantly, the advanced analytical and statistical methods offered by this package should be harnessed to comprehensively investigate the effects of agricultural practice changes on soil health within the {O}ne {H}ealth framework. {L}ooking ahead, the application of this method extends beyond the realm of {O}ne {H}ealth, offering valuable insights into various ecological scenarios. {I}ts versatility holds promise for elucidating complex interactions and dynamics within ecosystems. {B}y leveraging this tool, researchers can explore the broader implications of agricultural practice modifications, facilitating informed decisions and sustainable environmental management.},
  keywords = {{NOUVELLE} {CALEDONIE} ; {LOYAUTE} ; {MARE}},
  booktitle = {},
  journal = {{PL}o{S} {O}ne},
  volume = {20},
  numero = {1},
  pages = {e0311986 [32 p.]},
  ISSN = {1932-6203},
  year = {2025},
  DOI = {10.1371/journal.pone.0311986},
  URL = {https://www.documentation.ird.fr/hor/fdi:010092952},
}