@article{fdi:010091927,
  title = {{C}omplete genus-level phylogenomics and new subtribal classification of the pantropical plant family {A}nnonaceae},
  author = {{N}ge, {F}. {J}. and {C}haowasku, {T}. and {D}amthongdee, {A}. and {W}iya, {C}. and {S}oul{\'e}, {V}. {R}. {C}. and {R}odrigues-{V}az, {C}. and {B}ruy, {D}avid and {M}ariac, {C}{\'e}dric and {C}hatrou, {L}. {W}. and {C}hen, {J}. {H}. and {C}hoo, {L}. and {D}agallier, {L}pmj and {E}rkens, {R}. {H}. {J}. and {J}ohnson, {D}. {M}. and {L}eeratiwong, {C}. and {L}obao, {A}. {Q}. and {L}opes, {J}. {C}. and {M}artínez-{V}elarde, {M}. {F}. and {M}unzinger, {J}{\'e}r{\^o}me and {M}urray, {N}. {A}. and {N}eo, {W}. {L}. and {R}akotoarinivo, {M}. and {O}rtiz-{R}odriguez, {A}. {E}. and {S}onk{\'e}, {B}. and {T}homas, {D}. {C}. and {W}ieringa, {J}. {J}. and {C}ouvreur, {T}homas},
  editor = {},
  language = {{ENG}},
  abstract = {{A}nnonaceae is a major tropical plant family particularly diverse in tropical rain forests of the world. {A}lthough the classification and systematics of the family has significantly improved over the past decade, the most recent classification was based on a reduced set of plastid markers and incomplete genus-level taxon sampling. {T}his classification recognised 4 subfamilies and 20 tribes. {Y}et, several important problems persisted, especially the phylogenetic placement of the {A}frican genus {M}eiocarpidium, resolution of intertribal relationships within subfamily {M}almeoideae, resolution and classification within the diverse tribe {M}iliuseae with 23 genera, and the contrasting placement of the liana genus {A}rtabotrys when using nuclear versus plastid data. {H}ere, using a previously published {A}nnonaceae-specific nuclear bait kit, we generated for the first time a complete genus-level (108 taxa) phylogenomic tree of the family based on 373 loci. {W}e show that {M}eiocarpidium is sister to {A}mbavioideae and should be considered as a tribe and not a separate subfamily. {A}rtabotrys is recovered as belonging to tribe {D}uguetieae, and not {X}ylopieae as previously inferred based on plastid data, and is sister to two other {A}frican liana genera, {L}etestudoxa and {P}seudartabotrys. {F}inally, we were able to resolve intertribal relationships within subfamily {M}almeoideae and most of the relationships within tribe {M}iliuseae. {N}evertheless, we recovered strong gene conflict mainly at the backbone of the tribe, probably linked to a rapid diversification at its origin, leading to substantial incomplete lineage sorting. {W}e suggest that this conflict will be hard to resolve. {U}sing this novel phylogenomic framework we recognize 25 subtribes, 21 as new, to improve the infrafamilial classification of {A}nnonaceae.},
  keywords = {{A}nnonaceae ; high-throughput sequencing ; incongruence ; phylogenomics ; rain forests ; systematics},
  booktitle = {},
  journal = {{T}axon},
  volume = {[{E}arly access]},
  numero = {},
  pages = {[29 p.]},
  ISSN = {0040-0262},
  year = {2024},
  DOI = {10.1002/tax.13260},
  URL = {https://www.documentation.ird.fr/hor/fdi:010091927},
}