Orjuela J. auteur aut IRD Comte Aurore auteur aut IRD Ravel S. auteur aut IRD Charriat F. auteur aut IRD Vi T. auteur aut IRD Sabot François auteur aut IRD Cunnac Sébastien auteur aut IRD text journalArticle eng text/pdf reformatted digital access Using long reads provides higher contiguity and better genome assemblies. However, producing such high quality sequences from raw reads requires to chain a growing set of tools, and determining the best workflow is a complex task. To tackle this challenge, we developed CulebrONT, an open-source, scalable, modular and traceable Snakemake pipeline for assembling long reads data. CulebrONT enables to perform tests on multiple samples and multiple long reads assemblers in parallel, and can optionally perform, downstream circularization and polishing. It further provides a range of assembly quality metrics summarized in a final user-friendly report. CulebrONT alleviates the difficulties of assembly pipelines development, and allow users to identify the best assembly options. specialized 122 076 084 2 e46 [9 ] 2022 2804-3871 https://www.documentation.ird.fr/hor/fdi:010089128 10.24072/pcjournal.153 2804-3871 [F B010089128] https://www.documentation.ird.fr/hor/fdi:010089128 https://horizon.documentation.ird.fr/exl-doc/pleins_textes/2024-01/010089128.pdf IRD - Base Horizon / Pleins textes 2024-01-08 2025-02-24 fdi:010089128 fre