@article{fdi:010088302,
  title = {{P}an-genome inversion index reveals evolutionary insights into the subpopulation structure of {A}sian rice},
  author = {{Z}hou, {Y}. and {Y}u, {Z}. {C}. and {C}hebotarov, {D}. and {C}hougule, {K}. and {L}u, {Z}. {Y}. and {R}ivera, {L}. {F}. and {K}athiresan, {N}. and {A}l-{B}ader, {N}. and {M}ohammed, {N}. and {A}lsantely, {A}. and {M}ussurova, {S}. and {S}antos, {J}. and {T}himma, {M}. and {T}roukhan, {M}. and {F}ornasiero, {A}. and {G}reen, {C}. {D}. and {C}opetti, {D}. and {K}udrna, {D}. and {L}laca, {V}. and {L}orieux, {M}athias and {Z}uccolo, {A}. and {W}are, {D}. and {M}c{N}ally, {K}. and {Z}hang, {J}. {W}. and {W}ing, {R}. {A}.},
  editor = {},
  language = {{ENG}},
  abstract = {{U}nderstanding and exploiting genetic diversity is a key factor for the productive and stable production of rice. {H}ere, we utilize 73 high-quality genomes that encompass the subpopulation structure of {A}sian rice ({O}ryza sativa), plus the genomes of two wild relatives ({O}. rufipogon and {O}. punctata), to build a pan-genome inversion index of 1769 non-redundant inversions that span an average of similar to 29% of the {O}. sativa cv. {N}ipponbare reference genome sequence. {U}sing this index, we estimate an inversion rate of similar to 700 inversions per million years in {A}sian rice, which is 16 to 50 times higher than previously estimated for plants. {D}etailed analyses of these inversions show evidence of their effects on gene expression, recombination rate, and linkage disequilibrium. {O}ur study uncovers the prevalence and scale of large inversions (>= 100 bp) across the pan-genome of {A}sian rice and hints at their largely unexplored role in functional biology and crop performance.},
  keywords = {{ASIE}},
  booktitle = {},
  journal = {{N}ature {C}ommunications},
  volume = {14},
  numero = {1},
  pages = {1567 [14 p.]},
  year = {2023},
  DOI = {10.1038/s41467-023-37004-y},
  URL = {https://www.documentation.ird.fr/hor/fdi:010088302},
}