<?xml version="1.0"?>
<oai_dc:dc xmlns:oai_dc="http://www.openarchives.org/OAI/2.0/oai_dc/" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.openarchives.org/OAI/2.0/oai_dc/ http://www.openarchives.org/OAI/2.0/oai_dc.xsd">
  <dc:title>Comparison of simple RNA extraction methods for molecular diagnosis of hepatitis C virus in plasma</dc:title>
  <dc:creator>Hongjaisee, S.</dc:creator>
  <dc:creator>Jabjainai, Y.</dc:creator>
  <dc:creator>Sakset, S.</dc:creator>
  <dc:creator>Preechasuth, K.</dc:creator>
  <dc:creator>/Ngo-Giang-Huong, Nicole</dc:creator>
  <dc:creator>Khamduang, W.</dc:creator>
  <dc:subject>RNA extraction</dc:subject>
  <dc:subject>HCV</dc:subject>
  <dc:subject>molecular diagnosis</dc:subject>
  <dc:subject>RT-LAMP</dc:subject>
  <dc:subject>RT-PCR</dc:subject>
  <dc:subject>plasma</dc:subject>
  <dc:description>Nucleic acid extraction from biological samples is an important step for hepatitis C virus (HCV) diagnosis. However, such extractions are mostly based on silica-based column methodologies, which may limit their application for on-site diagnosis. A simple, rapid, and field-deployable method for RNA extraction is still needed. In this study, we evaluated the efficacy of four simple RNA extraction methods for the detection of HCV in plasma samples: a silica-membrane-based method, a magnetic-beads-based method, boiling with diethyl pyrocarbonate (DEPC)-treated distilled water, and using a commercial lysis buffer. HCV RNA was detected using both real-time reverse transcription polymerase chain reaction (RT-PCR) and reverse transcription loop-mediated isothermal amplification (RT-LAMP). Using real-time RT-PCR, extracted RNA from the silica-membrane-based and magnetic-beads-based methods had a 100% detection rate for RNA extraction from plasma. Using RT-LAMP, extracted RNA from the silica-membrane-based method showed a 66% detection rate, while the magnetic-beads-based method had a 62% detection rate. In summary, magnetic-beads-based extraction can be used as an alternative RNA extraction method for on-site HCV detection. Boiling with DEPC-treated distilled water was not appropriate for low HCV load samples, and boiling with a lysis buffer was not recommended.</dc:description>
  <dc:date>2022</dc:date>
  <dc:type>text</dc:type>
  <dc:identifier>https://www.documentation.ird.fr/hor/fdi:010085899</dc:identifier>
  <dc:identifier>fdi:010085899</dc:identifier>
  <dc:identifier>Hongjaisee S., Jabjainai Y., Sakset S., Preechasuth K., Ngo-Giang-Huong Nicole, Khamduang W.. Comparison of simple RNA extraction methods for molecular diagnosis of hepatitis C virus in plasma. 2022, 12 (7),  1599 [6 p.]</dc:identifier>
  <dc:language>EN</dc:language>
</oai_dc:dc>
