@article{fdi:010084266,
  title = {{C}hromosome-level {T}hlaspi arvense genome provides new tools for translational research and for a newly domesticated cash cover crop of the cooler climates},
  author = {{N}unn, {A}. and {R}odriguez-{A}revalo, {I}. and {T}andukar, {Z}. and {F}rels, {K}. and {C}ontreras-{G}arrido, {A}. and {C}arbonell-{B}ejerano, {P}. and {Z}hang, {P}. {P}. and {R}amos-{C}ruz, {D}. and {J}andrasits, {K}. and {L}anz, {C}. and {B}rusa, {A}. and {M}irouze, {M}arie and {D}orn, {K}. and {J}arvis, {B}. and {S}edbrook, {J}. and {W}yse, {D}. {L}. and {O}tto, {C}. and {L}angenberger, {D}. and {S}tadler, {P}. {F}. and {W}eigel, {D}. and {M}arks, {M}. {D}. and {A}nderson, {J}. {A}. and {B}ecker, {C}. and {C}hopra, {R}.},
  editor = {},
  language = {{ENG}},
  abstract = {{T}hlaspi arvense (field pennycress) is being domesticated as a winter annual oilseed crop capable of improving ecosystems and intensifying agricultural productivity without increasing land use. {I}t is a selfing diploid with a short life cycle and is amenable to genetic manipulations, making it an accessible field-based model species for genetics and epigenetics. {T}he availability of a high-quality reference genome is vital for understanding pennycress physiology and for clarifying its evolutionary history within the {B}rassicaceae. {H}ere, we present a chromosome-level genome assembly of var. {MN}106-{R}ef with improved gene annotation and use it to investigate gene structure differences between two accessions ({MN}108 and {S}pring32-10) that are highly amenable to genetic transformation. {W}e describe non-coding {RNA}s, pseudogenes and transposable elements, and highlight tissue-specific expression and methylation patterns. {R}esequencing of forty wild accessions provided insights into genome-wide genetic variation, and {QTL} regions were identified for a seedling colour phenotype. {A}ltogether, these data will serve as a tool for pennycress improvement in general and for translational research across the {B}rassicaceae.},
  keywords = {pennycress ; genome assembly ; genome annotations ; genetic mapping ; comparative genomics},
  booktitle = {},
  journal = {{P}lant {B}iotechnology {J}ournal},
  volume = {[{E}arly access]},
  numero = {},
  pages = {[20 p.]},
  ISSN = {1467-7644},
  year = {2022},
  DOI = {10.1111/pbi.13775},
  URL = {https://www.documentation.ird.fr/hor/fdi:010084266},
}