%0 Journal Article
%9 ACL : Articles dans des revues avec comité de lecture répertoriées par l'AERES
%A Durant, E.
%A Sabot, François
%A Conte, M.
%A Rouard, M.
%T Panache : a web browser-based viewer for linearized pangenomes
%D 2021
%L fdi:010083836
%G ENG
%J Bioinformatics
%@ 1367-4803
%M ISI:000733374500034
%N 23
%P 4556-4558
%R 10.1093/bioinformatics/btab688
%U https://www.documentation.ird.fr/hor/fdi:010083836
%> https://horizon.documentation.ird.fr/exl-doc/pleins_textes/2022-01/010083836.pdf
%V 37
%W Horizon (IRD)
%X Motivation: Pangenomics evolved since its first applications on bacteria, extending from the study of genes for a given population to the study of all of its sequences available. While multiple methods are being developed to construct pangenomes in eukaryotic species there is still a gap for efficient and user-friendly visualization tools. Emerging graph representations come with their own challenges, and linearity remains a suitable option for user-friendliness. Results: We introduce Panache, a tool for the visualization and exploration of linear representations of gene-based and sequence-based pangenomes. It uses a layout similar to genome browsers to display presence absence variations and additional tracks along a linear axis with a pangenomics perspective.
%$ 020 ; 122