@article{fdi:010079866,
  title = {{G}enome-wide screening and characterization of non-coding {RNA}s in {C}offea canephora},
  author = {{L}emos, {S}. {M}. {C}. and {F}oncatti, {L}. {F}. {C}. and {G}uyot, {R}omain and {P}aschoal, {A}. {R}. and {D}omingues, {D}. {S}.},
  editor = {},
  language = {{ENG}},
  abstract = {{C}offea canephoragrains are highly traded commodities worldwide. {N}on-coding {RNA}s (nc{RNA}s) are transcriptional products involved in genome regulation, environmental responses, and plant development. {T}here is not an extensive genome-wide analysis that uncovers the nc{RNA} portion of the{C}. canephoragenome. {T}his study aimed to provide a curated characterization of six nc{RNA} classes in the{C}offea canephoragenome. {F}or this purpose, we employed a combination of similarity-based and structural-based computational approaches with stringent curation. {C}andidate nc{RNA} loci had expression evidence analyzed using s{RNA}-seq libraries. {W}e identified 7455 nc{RNA} loci (6976 with transcriptional evidence) in the{C}. canephoragenome. {T}his comprised of total 115 sn{RNA}s, 1031 sno{RNA}s, 92 mi{RNA} precursors, 602 t{RNA}s, 72 r{RNA}s, and 5064 lnc{RNA}s. {F}or mi{RNA}s, we identified 159 putative high-confidence targets. {T}his study was the most extensive genomic catalog of curated nc{RNA}s in the {C}offea genus. {T}his data might help elaborating more robust hypotheses in future comparative genomic studies as well as gene regulation and genome dynamics, helping to understand the molecular basis of domestication, environmental adaptation, resistance to pests and diseases, and coffee productivity.},
  keywords = {coffee ; plant nc{RNA}s ; curated annotation ; genome-wide ; bioinformatics ; in silico},
  booktitle = {},
  journal = {{N}on-{C}oding {RNA}},
  volume = {6},
  numero = {3},
  pages = {39 [15p.]},
  year = {2020},
  DOI = {10.3390/ncrna6030039},
  URL = {https://www.documentation.ird.fr/hor/fdi:010079866},
}