@article{fdi:010079588,
  title = {{I}nfluence of plant genotype and soil on the wheat rhizosphere microbiome : evidences for a core microbiome across eight {A}frican and {E}uropean soils},
  author = {{S}imonin, {M}arie and {D}asilva, {C}. and {T}erzi, {V}. and {N}gonkeu, {E}. {L}. {M}. and {D}iouf, {D}. and {K}ane, {A}. and {B}{\'e}na, {G}illes and {M}oulin, {L}ionel},
  editor = {},
  language = {{ENG}},
  abstract = {{H}ere, we assessed the relative influence of wheat genotype, agricultural practices (conventional vs organic) and soil type on the rhizosphere microbiome. {W}e characterized the prokaryotic (archaea and bacteria) and eukaryotic (fungi and protists) communities in soils from four different countries ({C}ameroon, {F}rance, {I}taly, {S}enegal) and determined if a rhizosphere core microbiome existed across these different countries. {T}he wheat genotype had a limited effect on the rhizosphere microbiome (2% of variance) as the majority of the microbial taxa were consistently associated to multiple wheat genotypes grown in the same soil. {L}arge differences in taxa richness and in community structure were observed between the eight soils studied (57% variance) and the two agricultural practices (10% variance). {D}espite these differences between soils, we observed that 177 taxa (2 archaea, 103 bacteria, 41 fungi and 31 protists) were consistently detected in the rhizosphere, constituting a core microbiome. {I}n addition to being prevalent, these core taxa were highly abundant and collectively represented 50% of the reads in our data set. {B}ased on these results, we identify a list of key taxa as future targets of culturomics, metagenomics and wheat synthetic microbiomes. {A}dditionally, we show that protists are an integral part of the wheat holobiont that is currently overlooked.},
  keywords = {{P}hytobiome ; {W}inter {W}heat ; {R}hizosphere ; {P}rotists ; {F}ungi ; {A}rchaea ; {AFRIQUE} ; {EUROPE} ; {CAMEROUN} ; {FRANCE} ; {ITALIE} ; {SENEGAL}},
  booktitle = {},
  journal = {{FEMS} {M}icrobiology {E}cology},
  volume = {96},
  numero = {6},
  pages = {fiaa067 [18 p.]},
  ISSN = {0168-6496},
  year = {2020},
  DOI = {10.1093/femsec/fiaa067},
  URL = {https://www.documentation.ird.fr/hor/fdi:010079588},
}