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      <title>Evaluation of OMNIgene sputum and ethanol reagent for preservation of sputum prior to xpert and culture testing in Uganda</title>
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    <abstract>Xpert MTB/RIF (Xpert) and culture are the most reliable methods for tuberculosis diagnosis but are still poorly accessible in many low-resource countries. We aimed to assess the effects of OMNIgene Sputum (OM-S) and ethanol in preserving sputum for Xpert and OM-S for mycobacterial growth indicator tube (MGIT) testing over periods of 15 and 8 days, respectively. Sputum samples were collected from newly diagnosed smear-positive patients. For Xpert, pooled samples were split into 5 aliquots: 3 for Xpert on days 0, 7, and 15 without additive and 2 with either OM-S or ethanol at day 15. For MGIT, 2 aliquots were tested without preservative and 2 with OM-S at 0 and 8 days. Totals of 48 and 47 samples were included in the analysis for Xpert and culture. With Xpert, using day 0 as a reference, untreated samples stored for 7 and 15 days showed concordances of 45/46 (97.8%) and 46/48 (95.8%). For samples preserved with OM-S or ethanol for 15 days compared with untreated samples processed at day 0 or after 15 days, OM-S concordances were 46/48 (95.8%) and 47/48 (97.9%), while those of ethanol were 44/48 (91.7%) and 45/48 (93.8%). With MGIT, concordances between untreated and OM-S-treated samples were 21/41 (51.2%) at day 0 and 21/44 (47.7%) at day 8. In conclusion, Xpert equally detected tuberculosis in OM-S-treated and untreated samples up to 15 days but showed slightly lower detection in ethanol-treated samples. Among OM-S-treated samples, MGIT positivity was significantly lower than in untreated samples at both time points.</abstract>
    <targetAudience authority="marctarget">specialized</targetAudience>
    <subject>
      <topic>OMNIgene</topic>
      <topic>tuberculosis</topic>
      <topic>Xpert</topic>
      <topic>culture</topic>
    </subject>
    <subject authority="local">
      <geographic>OUGANDA</geographic>
    </subject>
    <classification authority="local">052</classification>
    <classification authority="local">050</classification>
    <classification authority="local">084</classification>
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      <titleInfo>
        <title>Journal of Clinical Microbiology</title>
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      <part>
        <detail type="volume">
          <number>58</number>
        </detail>
        <detail type="volume">
          <number>1</number>
        </detail>
        <extent unit="pages">
          <list>e00810-19 [11 ]</list>
        </extent>
      </part>
      <originInfo>
        <dateIssued>2020</dateIssued>
      </originInfo>
      <identifier type="issn">0095-1137</identifier>
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    <identifier type="uri">https://www.documentation.ird.fr/hor/fdi:010077750</identifier>
    <identifier type="doi">10.1128/jcm.00810-19</identifier>
    <identifier type="issn">0095-1137</identifier>
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