<?xml version="1.0"?>
<oai_dc:dc xmlns:oai_dc="http://www.openarchives.org/OAI/2.0/oai_dc/" xmlns:dc="http://purl.org/dc/elements/1.1/" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.openarchives.org/OAI/2.0/oai_dc/ http://www.openarchives.org/OAI/2.0/oai_dc.xsd">
  <dc:title>Evaluation of OMNIgene sputum and ethanol reagent for preservation of sputum prior to xpert and culture testing in Uganda</dc:title>
  <dc:creator>Ardizzoni, E.</dc:creator>
  <dc:creator>Orikiriza, P.</dc:creator>
  <dc:creator>Ssuuna, C.</dc:creator>
  <dc:creator>Nyehangane, D.</dc:creator>
  <dc:creator>Gumsboga, M.</dc:creator>
  <dc:creator>Taremwa, I. M.</dc:creator>
  <dc:creator>Turyashemererwa, E.</dc:creator>
  <dc:creator>Mwanga-Amumpaire, J.</dc:creator>
  <dc:creator>Langendorf, C.</dc:creator>
  <dc:creator>/Bonnet, Maryline</dc:creator>
  <dc:subject>OMNIgene</dc:subject>
  <dc:subject>tuberculosis</dc:subject>
  <dc:subject>Xpert</dc:subject>
  <dc:subject>culture</dc:subject>
  <dc:description>Xpert MTB/RIF (Xpert) and culture are the most reliable methods for tuberculosis diagnosis but are still poorly accessible in many low-resource countries. We aimed to assess the effects of OMNIgene Sputum (OM-S) and ethanol in preserving sputum for Xpert and OM-S for mycobacterial growth indicator tube (MGIT) testing over periods of 15 and 8 days, respectively. Sputum samples were collected from newly diagnosed smear-positive patients. For Xpert, pooled samples were split into 5 aliquots: 3 for Xpert on days 0, 7, and 15 without additive and 2 with either OM-S or ethanol at day 15. For MGIT, 2 aliquots were tested without preservative and 2 with OM-S at 0 and 8 days. Totals of 48 and 47 samples were included in the analysis for Xpert and culture. With Xpert, using day 0 as a reference, untreated samples stored for 7 and 15 days showed concordances of 45/46 (97.8%) and 46/48 (95.8%). For samples preserved with OM-S or ethanol for 15 days compared with untreated samples processed at day 0 or after 15 days, OM-S concordances were 46/48 (95.8%) and 47/48 (97.9%), while those of ethanol were 44/48 (91.7%) and 45/48 (93.8%). With MGIT, concordances between untreated and OM-S-treated samples were 21/41 (51.2%) at day 0 and 21/44 (47.7%) at day 8. In conclusion, Xpert equally detected tuberculosis in OM-S-treated and untreated samples up to 15 days but showed slightly lower detection in ethanol-treated samples. Among OM-S-treated samples, MGIT positivity was significantly lower than in untreated samples at both time points.</dc:description>
  <dc:date>2020</dc:date>
  <dc:type>text</dc:type>
  <dc:identifier>https://www.documentation.ird.fr/hor/fdi:010077750</dc:identifier>
  <dc:identifier>fdi:010077750</dc:identifier>
  <dc:identifier>Ardizzoni E., Orikiriza P., Ssuuna C., Nyehangane D., Gumsboga M., Taremwa I. M., Turyashemererwa E., Mwanga-Amumpaire J., Langendorf C., Bonnet Maryline. Evaluation of OMNIgene sputum and ethanol reagent for preservation of sputum prior to xpert and culture testing in Uganda. 2020, 58 (1), e00810-19 [11 ]</dc:identifier>
  <dc:language>EN</dc:language>
  <dc:coverage>OUGANDA</dc:coverage>
</oai_dc:dc>
