@article{fdi:010069343,
  title = {{D}e novo assemblies of three {O}ryza glaberrima accessions provide first insights about pan-genome of {A}frican rices},
  author = {{M}onat, {C}{\'e}cile and {P}era, {B}. and {N}djiondjop, {M}. {N}. and {S}ow, {M}. and {D}ubreuil {T}ranchant, {C}hristine and {B}astianelli, {L}. and {G}hesqui{\`e}re, {A}lain and {S}abot, {F}ran{\c{c}}ois},
  editor = {},
  language = {{ENG}},
  abstract = {{O}ryza glaberrima is one of the two cultivated species of rice, and harbors various interesting agronomic traits, especially in biotic and abiotic resistance, compared with its {A}sian cousin {O}. sativa. {A} previous reference genome was published but newer studies highlighted some missing parts. {M}oreover, global species diversity is known nowadays to be represented by more than one single individual. {F}or that purpose, we sequenced, assembled and annotated de novo three different cultivars from {O}. glaberrima. {A}fter validating our assemblies, we were able to better solve complex regions than the previous assembly and to provide a first insight in pan-genomic divergence between individuals. {T}he three assemblies shown large common regions, but almost 25% of the genome present collinearity breakpoints or are even individual specific.},
  keywords = {assembly ; {A}frican rice ; pan-genome ; {AFRIQUE}},
  booktitle = {},
  journal = {{G}enome {B}iology and {E}volution},
  volume = {9},
  numero = {1},
  pages = {1--6},
  ISSN = {1759-6653},
  year = {2017},
  DOI = {10.1093/gbe/evw253},
  URL = {https://www.documentation.ird.fr/hor/fdi:010069343},
}