@inproceedings{fdi:010067426,
  title = {{O}nline collaborative environment to run stock assessment workflow : an option for {IOTC} ?},
  author = {{I}mzilen, {T}. and {B}onhommeau, {S}. and {R}oyer, {T}. and {K}ell, {L}.{T}. and {C}hassot, {E}mmanuel and {B}arde, {J}ulien},
  editor = {},
  language = {{ENG}},
  abstract = {{I}n this note, we present an approach which has been recently used to execute online the set of codes used for eastern blue n tuna ({BFT}-{E}) stock assessment at {ICCAT}. {W}e aim at discussing the possible interest of the approach to the {IOTC} {C}ommunity for focusing on {I}ndian ocean tuna and tuna-like stocks and running other assesment models such as {S}tock {S}ynthesis 3 ({SS}3). {I}n 2014, {ICCAT} {BFT}-{E} working group has been able to execute thousands of model runs by using parallelization of {R} and {F}ortran codes on a supercomputer. {T}his approach has a lot of scienti c bene ts, in particular for better including the multiple sources of uncer- tainty in assessment results and associated scienti c advice. {H}owever, very few participants would be able to reproduce it without speci c technical skills. {S}ince {N}ovember 2015, a {W}eb{S}ite or {VRE} for {V}irtual {R}esearch {E}n- vironment has been set up within the {H}2020 {B}lue{B}ridge project to enable users to easily parametrize and execute various steps of the {BFT}-{E} stock assessment work ow. {B}y repackaging codes provided by {ICCAT} {BFT}-{E} working group, the same codes are now executable online. {T}hey can be parametrized, executed and edited by anybody from a simple web page and data outputs are delivered in standard data format. {A}t this stage, this {VRE} comes with various collaborative {W}eb {S}ervices: (i) a workspace to share documents or data, (ii) {W}eb pages or {RS}tudio server to process data online, and (iii) an automated report service to dynamically generate documents packaging these results. {S}uch a collaborative environment enables to store and access the whole set of data and source codes to replicate past results or to try new parametrizations of the model with usual tools or simple web forms. {S}uch an approach might bring more transparency and collaboration within working groups.},
  keywords = {{GESTION} {DES} {PECHES} ; {GESTION} {DE} {STOCK} ; {INFORMATIQUE} {SCIENTIFIQUE} ; {THON} ; {OCEAN} {INDIEN}},
  numero = {{IOTC}-2016-{WPM}07-13-{R}ev1},
  pages = {15  multigr.},
  booktitle = {},
  year = {2016},
  URL = {https://www.documentation.ird.fr/hor/fdi:010067426},
}