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      <ref-type name="Journal Article">17</ref-type>
      <work-type>ACL : Articles dans des revues avec comité de lecture répertoriées par l'AERES</work-type>
      <contributors>
        <authors>
          <author>
            <style face="normal" font="default" size="100%">Beck, I. A.</style>
          </author>
          <author>
            <style face="normal" font="default" size="100%">Crowell, C.</style>
          </author>
          <author>
            <style face="normal" font="default" size="100%">Kittoe, R.</style>
          </author>
          <author>
            <style face="normal" font="default" size="100%">Bredell, H.</style>
          </author>
          <author>
            <style face="normal" font="default" size="100%">Machaba, M.</style>
          </author>
          <author>
            <style face="normal" font="default" size="100%">Willamson, C.</style>
          </author>
          <author>
            <style face="normal" font="default" size="100%">Janssens, W.</style>
          </author>
          <author>
            <style face="normal" font="default" size="100%">Jallow, S.</style>
          </author>
          <author>
            <style face="normal" font="default" size="100%">van der Groen, G.</style>
          </author>
          <author>
            <style face="normal" font="default" size="100%">Shao, Y.</style>
          </author>
          <author>
            <style face="normal" font="default" size="100%">Jacob, M.</style>
          </author>
          <author>
            <style face="normal" font="default" size="100%">Samuel, N. M.</style>
          </author>
          <author>
            <style face="normal" font="default" size="100%">de Rivera, I. L.</style>
          </author>
          <author>
            <style face="bold" font="default" size="100%">Ngo-Giang-Huong, Nicole</style>
          </author>
          <author>
            <style face="normal" font="default" size="100%">Cassol, S.</style>
          </author>
          <author>
            <style face="normal" font="default" size="100%">Alemnji, G.</style>
          </author>
          <author>
            <style face="normal" font="default" size="100%">Frenkel, L. M.</style>
          </author>
        </authors>
      </contributors>
      <titles>
        <title>Optimization of the oligonucleotide ligation assay, a rapid and inexpensive test for detection of HIV-1 drug resistance mutations, for non-North American variants</title>
        <secondary-title>JAIDS Journal of Acquired Immune Deficiency Syndromes</secondary-title>
      </titles>
      <pages>418-427</pages>
      <keywords>
        <keyword>Hiv drug resistance</keyword>
        <keyword>Hiv-1 non-b subtypes</keyword>
        <keyword>Resistance testing</keyword>
        <keyword>Oligonucleotide ligation assay</keyword>
        <keyword>Minor genotypes</keyword>
        <keyword>Point mutation assay</keyword>
        <keyword>Dried blood spots</keyword>
      </keywords>
      <dates>
        <year>2008</year>
      </dates>
      <call-num>fdi:010042699</call-num>
      <language>ENG</language>
      <periodical>
        <full-title>JAIDS Journal of Acquired Immune Deficiency Syndromes</full-title>
      </periodical>
      <isbn>1525-4135</isbn>
      <accession-num>ISI:000257808100006</accession-num>
      <number>4</number>
      <electronic-resource-num>10.1097/QAI.0b013e31817ed7d7</electronic-resource-num>
      <urls>
        <related-urls>
          <url>https://www.documentation.ird.fr/hor/fdi:010042699</url>
        </related-urls>
        <pdf-urls>
          <url>https://www.documentation.ird.fr/intranet/publi/2008/08/010042699.pdf</url>
        </pdf-urls>
      </urls>
      <volume>48</volume>
      <remote-database-provider>Horizon (IRD)</remote-database-provider>
      <abstract>Objective: We evaluated the feasibility of the oligonucleotide ligation assay (OLA), a specific, sensitive, and economical ligase-based point mutation assay designed to detect HIV-1 drug-resistance mutations at 12 codons of HIV-1 subtype B pol, for potential use in resource-poor settings. Methods: Specimens from HIV-1-infected individuals collected by 7 international laboratories, including subtypes A, B, C, D, F, G, J, and recombinants AE and AG, were tested by the OLA developed for HIV-1 subtype B. Common polymorphisms that interfered with reactivity of the OLA were identified and modified probes designed and evaluated. Results: 92.5% (2410) of 2604 codons in specimens from 217 individuals were successfully genotyped by the subtype B OLA. A high rate (range 8.3%-31.2%) of indeterminate results (negative OLA reaction for both mutant and wild type) was observed for 5 codons. Modified probes at reverse transcriptase codons 151 and 184 and protease codon 90 increased the rate of valid OLA to 96.1%. Conclusions: The OLA designed for HIV-1 subtype B genotyped most pol codons in non-B subtypes from Asia and Africa but was improved by addition of several modified probes. International laboratories experienced in molecular techniques were able to perform the OLA.</abstract>
      <custom6>052 ; 050</custom6>
      <custom1>UR174</custom1>
      <custom7>Chine / Cameroun / Honduras / Inde / Thaïlande / Afrique du Sud</custom7>
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