COVID-19 in 16 West African countries : an assessment of the epidemiology and genetic diversity of SARS-CoV-2 after four epidemic waves

2023

Article référencé dans le Web of Science WOS:001163653600015

Ndiaye A. J. S., Beye M., Sow A., Lo G. R., Padane A., Sokhna Cheikh, Kane C. T., Colson P., Fenollar F., Mboup S., Fournier P. E.

American Journal of Tropical Medicine and Hygiene, 2023, 109 (4), 861-873 ISSN 0002-9637

West Africa faced the COVID-19 pandemic in early March 2020 and, as of March 31, 2022, had more than 900,000 confirmed cases and more than 12,000 deaths. During this period, SARS-CoV-2 genomes evolved genetically, resulting in the emergence of distinct lineages. This review was conducted to provide the epidemiological profile of COVID-19, the mutational profile of SARS-CoV-2, and the dynamics of its lineages in the 16 west African countries by analyzing data from 33 studies and seven situation reports. For a more complete representation of the epidemiology and genetic diversity of SARS-CoV-2, we used reliable public data in addition to eligible studies. As of March 31, 2022, the 16 west African countries experienced four epidemic waves with variable intensities. Higher mortality was noted during the third wave with a case fatality rate (CFR) of 1.9%. After these four epidemic waves, Liberia recorded the highest CFR (4.0%), whereas Benin had the lowest CFR (0.6%). Through mutational analysis, a high genetic heterogeneity of the genomes was observed, with a predominance of mutations in the spike protein. From this high mutational rate, different lineages emerged. Our analysis of the evolutionary diversity allowed us to count 205 lineages circulating in west Africa. This study has provided a good representation of the mutational profile and the prevalence of SARS CoV-2 lineages beyond the knowledge of the global epidemiology of the 16 African countries.

Santé : généralités [050] ; Entomologie médicale / Parasitologie / Virologie [052]

AFRIQUE DE L'OUEST

Fonds IRD [F B010089581]

fdi:010089581