@article{fdi:010074453,
  title = {{R}ec{P}hylo{XML} : a format for reconciled gene trees},
  author = {{D}uchemin, {W}. and {G}ence, {G}. and {C}hifolleau, {A}. {M}. {A}. and {A}rvestad, {L}. and {B}ansal, {M}. {S}. and {B}erry, {V}. and {B}oussau, {B}. and {C}hevenet, {F}ran{\c{c}}ois and {C}omte, {N}. and {D}avin, {A}. {A}. and {D}essimoz, {C}. and {D}ylus, {D}. and {H}asic, {D}. and {M}allo, {D}. and {P}lanel, {R}. and {P}osada, {D}. and {S}cornavacca, {C}. and {S}zollosi, {G}. and {Z}hang, {L}. {X}. and {T}annier, {E}. and {D}aubin, {V}.},
  editor = {},
  language = {{ENG}},
  abstract = {{M}otivation: {A} reconciliation is an annotation of the nodes of a gene tree with evolutionary events-for example, speciation, gene duplication, transfer, loss, etc. -along with a mapping onto a species tree. {M}any algorithms and software produce or use reconciliations but often using different reconciliation formats, regarding the type of events considered or whether the species tree is dated or not. {T}his complicates the comparison and communication between different programs. {R}esults: {H}ere, we gather a consortium of software developers in gene tree species tree reconciliation to propose and endorse a format that aims to promote an integrative-albeit flexible-specification of phylogenetic reconciliations. {T}his format, named rec{P}hylo{XML}, is accompanied by several tools such as a reconciled tree visualizer and conversion utilities.},
  keywords = {},
  booktitle = {},
  journal = {{B}ioinformatics},
  volume = {34},
  numero = {21},
  pages = {3646--3652},
  ISSN = {1367-4803},
  year = {2018},
  DOI = {10.1093/bioinformatics/bty389},
  URL = {https://www.documentation.ird.fr/hor/fdi:010074453},
}