@article{fdi:010068304,
  title = {{C}hloroplast sequence of treegourd ({C}rescentia cujete, {B}ignoniaceae) to study phylogeography and domestication},
  author = {{M}oreira, {P}. {A}. and {M}ariac, {C}{\'e}dric and {S}carcelli, {N}ora and {C}ouderc, {M}arie and {R}odrigues, {D}. {P}. and {C}l{\'e}ment, {C}. {R}. and {V}igouroux, {Y}ves},
  editor = {},
  language = {{ENG}},
  abstract = {{P}remise of the study: {C}rescentia cujete ({B}ignoniaceae) fruit rinds are traditionally used for storage vessels and handicrafts. {W}e assembled its chloroplast genome and identified single-nucleotide polymorphisms ({SNP}s). {M}ethods and {R}esults: {U}sing a genome skimming approach, the whole chloroplast of {C}. cujete was assembled using 3,106,928 sequence reads of 150 bp. {T}he chloroplast is 154,662 bp in length, structurally divided into a large single copy region (84,788 bp), a small single copy region (18,299 bp), and two inverted repeat regions (51,575 bp) with 88 genes annotated. {B}y resequencing the whole chloroplast, we identified 66 {SNP}s in {C}. cujete ({N} = 30) and 68 {SNP}s in {C}. amazonica ({N} = 6). {N}ucleotide diversity was estimated at 1.1 x 10(-3) and 3.5 x 10(-3) for {C}. cujete and {C}. amazonica, respectively. {C}onclusions: {T}his broadened {C}. cujete genetic toolkit will be important to study the origin, domestication, diversity, and phylogeography of treegourds in the {N}eotropics.},
  keywords = {{B}ignoniaceae ; calabash tree ; {C}rescentia amazonica ; cuia ; next-generation ; sequencing ; single-nucleotide polymorphism ({SNP}) ; {BRESIL} ; {AMAZONIE} ; {AMAZONE} {BASSIN}},
  booktitle = {},
  journal = {{A}pplications in {P}lant {S}ciences},
  volume = {4},
  numero = {10},
  pages = {1600048 [4 ]},
  ISSN = {2168-0450},
  year = {2016},
  DOI = {10.3732/apps.1600048},
  URL = {https://www.documentation.ird.fr/hor/fdi:010068304},
}