@article{fdi:010064798, title = {{G}enetic identities and local inbreeding in pure diploid clones with homoplasic markers : {SNP}s may be misleading [plus {C}orrigendum, 2016, vol. 42, p. 83]}, author = {{D}e {M}eeûs, {T}hierry}, editor = {}, language = {{ENG}}, abstract = {{E}xpected values for observed heterozygosity, genetic diversity, and inbreeding of individuals relative to inbreeding of the population ({F}-{IS}) are derived in the case of one locus displaying homoplasy with {K} possible allelic states ({RAM} model) in a clonal diploid population. {H}eterozygosity ({H}-{O}) and genetic diversity ({H}-{S}) are substantially affected by homoplasy as long as the number of alleles {K} <= 10, while {F}-{IS} remains weakly affected in any case. {S}imulations suggest that in big populations, or in case of maximum homoplasy ({K} = 2), expected values can appear far from the observed ones because equilibrium takes too many generations to be reached at homoplasic markers in clonally propagating populations. {T}his raises some concern on the use of {SNP}s, at least in clonal populations.}, keywords = {{P}opulation genetics ; {H}eterozygosity ; {G}enetic diversity ; {H}omoplasy ; {E}quilibrium}, booktitle = {}, journal = {{I}nfection {G}enetics and {E}volution}, volume = {33}, numero = {}, pages = {227--232}, ISSN = {1567-1348}, year = {2015}, DOI = {10.1016/j.meegid.2015.05.008}, URL = {https://www.documentation.ird.fr/hor/fdi:010064798}, }