@article{fdi:010060579,
  title = {{C}ontribution of subgenomes to the transcriptome and their intertwined regulation in the allopolyploid {C}offea arabica grown at contrasted temperatures},
  author = {{C}ombes, {M}arie-{C}hristine and {D}ereeper, {A}lexis and {S}everac, {D}. and {B}ertrand, {B}. and {L}ashermes, {P}hilippe},
  editor = {},
  language = {{ENG}},
  abstract = {{P}olyploidy has occurred throughout the evolutionary history of plants and led to diversification and plant ecological adaptation. {F}unctional plasticity of duplicate genes is believed to play a major role in the environmental adaptation of polyploids. {I}n this context, we characterized genome-wide homoeologous gene expression in {C}offea arabica, a recent allopolyploid combining two subgenomes that derive from two closely related diploid species, and investigated its variation in response to changing environment. {T}he transcriptome of leaves of {C}. arabica cultivated at different growing temperatures suitable for one or the other parental species was examined using {RNA}-sequencing. {T}he relative contribution of homoeologs to gene expression was estimated for 9959 and 10 628 genes in warm and cold conditions, respectively. {W}hatever the growing conditions, 65% of the genes showed equivalent levels of homoeologous gene expression. {I}n 92% of the genes, relative homoeologous gene expression varied < 10% between growing temperatures. {T}he subgenome contributions to the transcriptome appeared to be only marginally altered by the different conditions (involving intertwined regulations of homeologs) suggesting that {C}. arabica's ability to tolerate a broader range of growing temperatures than its diploid parents does not result from differential use of homoeologs.},
  keywords = {adaptation ; cis trans-regulation ; coffee ({C}offea arabica) ; homoeologous ; gene expression ; polyploidy ; {RNA}-sequencing ; transcriptome},
  booktitle = {},
  journal = {{N}ew {P}hytologist},
  volume = {200},
  numero = {1},
  pages = {251--260},
  ISSN = {1469-8137},
  year = {2013},
  DOI = {10.1111/nph.12371},
  URL = {https://www.documentation.ird.fr/hor/fdi:010060579},
}