Horizon / Plein textes La base de ressources documentaires de l'IRD

IRD

 

Publications des scientifiques de l'IRD

Kuhn J. H., Bao Y. M., Bavari S., Becker S., Bradfute S., Brister J. R., Bukreyev A. A., Cai Y. Y., Chandran K., Davey R. A., Dolnik O., Dye J. M., Enterlein S., Gonzalez Jean-Paul, Formenty P., Freiberg A. N., Hensley L. E., Honko A. N., Ignatyev G. M., Jahrling P. B., Johnson K. M., Klenk H. D., Kobinger G., Lackemeyer M. G., Leroy Eric, Lever M. S., Lofts L. L., Muhlberger E., Netesov S. V., Olinger G. G., Palacios G., Patterson J. L., Paweska J. T., Pitt L., Radoshitzky S. R., Ryabchikova E. I., Saphire E. O., Shestopalov A. M., Smither S. J., Sullivan N. J., Swanepoel R., Takada A., Towner J. S., van der Groen G., Volchkov V. E., Wahl-Jensen V., Warren T. K., Warfield K. L., Weidmann M., Nichol S. T. (2013). Virus nomenclature below the species level : a standardized nomenclature for laboratory animal-adapted strains and variants of viruses assigned to the family Filoviridae. Archives of Virology, 158 (6), 1425-1432. ISSN 0304-8608

Accès réservé (Intranet IRD) Demander le PDF

Lien direct chez l'éditeur doi:10.1007/s00705-012-1594-2

Titre
Virus nomenclature below the species level : a standardized nomenclature for laboratory animal-adapted strains and variants of viruses assigned to the family Filoviridae
Année de publication2013
Type de documentArticle référencé dans le Web of Science WOS:000319762800035
AuteursKuhn J. H., Bao Y. M., Bavari S., Becker S., Bradfute S., Brister J. R., Bukreyev A. A., Cai Y. Y., Chandran K., Davey R. A., Dolnik O., Dye J. M., Enterlein S., Gonzalez Jean-Paul, Formenty P., Freiberg A. N., Hensley L. E., Honko A. N., Ignatyev G. M., Jahrling P. B., Johnson K. M., Klenk H. D., Kobinger G., Lackemeyer M. G., Leroy Eric, Lever M. S., Lofts L. L., Muhlberger E., Netesov S. V., Olinger G. G., Palacios G., Patterson J. L., Paweska J. T., Pitt L., Radoshitzky S. R., Ryabchikova E. I., Saphire E. O., Shestopalov A. M., Smither S. J., Sullivan N. J., Swanepoel R., Takada A., Towner J. S., van der Groen G., Volchkov V. E., Wahl-Jensen V., Warren T. K., Warfield K. L., Weidmann M., Nichol S. T.
SourceArchives of Virology, 2013, 158 (6), p. 1425-1432. ISSN 0304-8608
RésuméThe International Committee on Taxonomy of Viruses (ICTV) organizes the classification of viruses into taxa, but is not responsible for the nomenclature for taxa members. International experts groups, such as the ICTV Study Groups, recommend the classification and naming of viruses and their strains, variants, and isolates. The ICTV Filoviridae Study Group has recently introduced an updated classification and nomenclature for filoviruses. Subsequently, and together with numerous other filovirus experts, a consistent nomenclature for their natural genetic variants and isolates was developed that aims at simplifying the retrieval of sequence data from electronic databases. This is a first important step toward a viral genome annotation standard as sought by the US National Center for Biotechnology Information (NCBI). Here, this work is extended to include filoviruses obtained in the laboratory by artificial selection through passage in laboratory hosts. The previously developed template for natural filovirus genetic variant naming (< virus name > < isolation host-suffix >/< country of sampling >/< year of sampling >/< genetic variant designation >-< isolate designation >) is retained, but it is proposed to adapt the type of information added to each field for laboratory animal-adapted variants. For instance, the full-length designation of an Ebola virus Mayinga variant adapted at the State Research Center for Virology and Biotechnology "Vector" to cause disease in guinea pigs after seven passages would be akin to "Ebola virus VECTOR/C.porcellus-lab/COD/1976/Mayinga-GPA-P7". As was proposed for the names of natural filovirus variants, we suggest using the full-length designation in databases, as well as in the method section of publications. Shortened designations (such as "EBOV VECTOR/C.por/COD/76/May-GPA-P7") and abbreviations (such as "EBOV/May-GPA-P7") could be used in the remainder of the text depending on how critical it is to convey information contained in the full-length name. "EBOV" would suffice if only one EBOV strain/variant/isolate is addressed.
Plan de classementEntomologie médicale / Parasitologie / Virologie [052]
LocalisationFonds IRD [F B010060416]
Identifiant IRDfdi:010060416
Lien permanenthttp://www.documentation.ird.fr/hor/fdi:010060416

Export des données

Disponibilité des documents

Télechargment fichier PDF téléchargeable

Lien sur le Web lien chez l'éditeur

Accès réservé en accès réservé

HAL en libre accès sur HAL


Accès aux documents originaux :

Le FDI est labellisé CollEx

Accès direct

Bureau du chercheur

Site de la documentation

Espace intranet IST (accès réservé)

Suivi des publications IRD (accès réservé)

Mentions légales

Services Horizon

Poser une question

Consulter l'aide en ligne

Déposer une publication (accès réservé)

S'abonner au flux RSS

Voir les tableaux chronologiques et thématiques

Centres de documentation

Bondy

Montpellier (centre IRD)

Montpellier (MSE)

Cayenne

Nouméa

Papeete

Abidjan

Dakar

Niamey

Ouagadougou

Tunis

La Paz

Quito